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(-) Description

Title :  CLPP SER98DHA
 
Authors :  M. Gersch, R. Kolb, F. Alte, M. Groll, S. A. Sieber
Date :  26 Sep 13  (Deposition) - 23 Oct 13  (Release) - 12 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F,G
Biol. Unit 1:  A,B,C,D,E,F,G  (2x)
Keywords :  Serine Protease, Clpp, Inhibition, Complex Disassembly, Dehydroalanine, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Gersch, R. Kolb, F. Alte, M. Groll, S. A. Sieber
Disruption Of Oligomerization And Dehydroalanine Formation As Mechanisms For Clpp Protease Inhibition.
J. Am. Chem. Soc. V. 136 1360 2014
PubMed-ID: 24106749  |  Reference-DOI: 10.1021/JA4082793

(-) Compounds

Molecule 1 - ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT
    Chains: A, B, C, D, E, F, G
    EC Number: 3.4.21.92
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET301
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CLPP, SAOUHSC_00790
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS
    Organism Taxid: 93061
    Strain: NCTC 8325
    Synonym: ENDOPEPTIDASE CLP

 Structural Features

(-) Chains, Units

  1234567
Asymmetric Unit : ABCDEFG
Biological Unit 1 (2x): ABCDEFG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric Unit (1, 7)
No.NameCountTypeFull Name
1DHA7Mod. Amino Acid2-AMINO-ACRYLIC ACID
Biological Unit 1 (1, 14)
No.NameCountTypeFull Name
1DHA14Mod. Amino Acid2-AMINO-ACRYLIC ACID

(-) Sites  (0, 0)

(no "Site" information available for 4MXI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MXI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MXI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MXI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MXI)

(-) Exons   (0, 0)

(no "Exon" information available for 4MXI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains d4mxia_ A: automated matches                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhh......eee....eee......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh....eeehhhhhhhh...ee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mxi A  19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAAsMGSFLLAAGAKGKRFALPNAEVMIHQPQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK 195
                                    28        38        48        58        68        78        88        98       108       118      |134       144       154       164       174       184       194 
                                                                                                          98-DHA                    125|                                                               
                                                                                                                                     132                                                               


Chain B from PDB  Type:PROTEIN  Length:166
                                                                                                                                                                                                      
               SCOP domains d4mxib_ B: automated matches                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeee.hhhhhhhhh.....eee....eee.....hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh....eehhhhhhhhh...ee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mxi B  19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAAsMGSFLLAAGAKGKRFALPNAEVMIHQPTEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192
                                    28        38        48        58        68        78        88        98       108       118      |136       146       156       166       176       186      
                                                                                                          98-DHA                    125|                                                          
                                                                                                                                     134                                                          


Chain C from PDB  Type:PROTEIN  Length:169
                                                                                                                                                                                                         
               SCOP domains d4mxic_ C: automated matches                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeee.hhhhhhhhh.....eee....eee......hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh....eeehhhhhhhh...ee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mxi C  19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAAsMGSFLLAAGAKGKRFALPNAEVMIHQPLTEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPET 194
                                    28        38        48        58        68        78        88        98       108       118       135       145       155       165       175       185         
                                                                                                          98-DHA                     126|                                                            
                                                                                                                                      134                                                            


Chain D from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains d4mxid_ D: automated matches                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhh......eee....eee.....hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh....eehhhhhhhhh...ee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mxi D  18 YDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAAsMGSFLLAAGAKGKRFALPNAEVMIHQPTEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192
                                    27        37        47        57        67        77        87        97|      107       117       135       145       155       165       175       185       
                                                                                                           98-DHA                    125|                                                          
                                                                                                                                      134                                                          


Chain E from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains d4mxie_ E: automated matches                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhh......eee....eee.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..eehhhhhhhhh...ee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mxi E  18 YDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAAsMGSFLLAAGAKGKRFALPNAEVMIHQPLQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192
                                    27        37        47        57        67        77        87        97|      107       117       132       142       152       162       172       182       192
                                                                                                           98-DHA                     126|                                                            
                                                                                                                                       132                                                            


Chain F from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains d4mxif_ F: automated matches                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eee.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh....eehhhhhhhhh...ee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mxi F  18 YDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAAsMGSFLLAAGAKGKRFALPNAEVMIHQPLQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192
                                    27        37        47        57        67        77        87        97|      107       117       132       142       152       162       172       182       192
                                                                                                           98-DHA                     126|                                                            
                                                                                                                                       132                                                            


Chain G from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains d4mxig_ G: automated matches                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eee.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh....eehhhhhhhhh...ee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mxi G  18 YDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAAsMGSFLLAAGAKGKRFALPNAEVMIHQPLQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
                                    27        37        47        57        67        77        87        97|      107       117       132       142       152       162       172       182       192 
                                                                                                           98-DHA                     126|                                                             
                                                                                                                                       132
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 7)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MXI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MXI)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)

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  4mxi
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  CLPP_STAA8 | Q2G036
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLPP_STAA8 | Q2G036: 3qwd 3v5e 3v5i 5c90 5vz2

(-) Related Entries Specified in the PDB File

3qwd CRYSTAL STRUCTURE OF CLPP FROM STAPHYLOCOCCUS AUREUS
3v5e CRYSTAL STRUCTURE OF CLPP FROM STAPHYLOCOCCUS AUREUS IN THE ACTIVE, EXTENDED CONFORMATION
3v5i THE CRYSTAL STRUCTURE OF THE MUTANT CLPP S98A (STAPHYLOCOCCUS AUREUS)