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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF CLPP FROM STAPHYLOCOCCUS AUREUS IN THE ACTIVE, EXTENDED CONFORMATION
 
Authors :  M. Gersch, A. List, M. Groll, S. Sieber
Date :  16 Dec 11  (Deposition) - 08 Feb 12  (Release) - 11 Jul 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Gersch, A. List, M. Groll, S. A. Sieber
Insights Into Structural Network Responsible For Oligomerization And Activity Of Bacterial Virulence Regulator Caseinolytic Protease P (Clpp) Protein.
J. Biol. Chem. V. 287 9484 2012
PubMed-ID: 22291011  |  Reference-DOI: 10.1074/JBC.M111.336222

(-) Compounds

Molecule 1 - ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N
    EC Number: 3.4.21.92
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET301
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CLPP, SAOUHSC_00790
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS
    Organism Taxid: 93061
    Strain: NCTC 8325
    Synonym: ENDOPEPTIDASE CLP

 Structural Features

(-) Chains, Units

  1234567891011121314
Asymmetric/Biological Unit : ABCDEFGHIJKLMN

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3V5E)

(-) Sites  (0, 0)

(no "Site" information available for 3V5E)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3V5E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3V5E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3V5E)

(-) PROSITE Motifs  (2, 28)

Asymmetric/Biological Unit (2, 28)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CLP_PROTEASE_SERPS00381 Endopeptidase Clp serine active site.CLPP_STAA890-101
 
 
 
 
 
 
 
 
 
 
 
 
 		  14A:90-101
B:90-101
C:90-101
D:90-101
E:90-101
F:90-101
G:90-101
H:90-101
I:90-101
J:90-101
K:90-101
L:90-101
M:90-101
N:90-101
2CLP_PROTEASE_HISPS00382 Endopeptidase Clp histidine active site.CLPP_STAA8112-125
 
 
 
 
 
 
 
 
 
 
 
 
 		  14A:112-125
B:112-125
C:112-125
D:112-125
E:112-125
F:112-125
G:112-125
H:112-125
I:112-125
J:112-125
K:112-125
L:112-125
M:112-125
N:112-125

(-) Exons   (0, 0)

(no "Exon" information available for 3V5E)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:184
 aligned with CLPP_STAA8 | Q2G036 from UniProtKB/Swiss-Prot  Length:195

    Alignment length:190
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
           CLPP_STAA8     4 IPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
               SCOP domains d3v5ea      _ A: automated matches                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..------..eehhhhhhh..eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeeehhhhhhh....ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H-------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v5e A   4 IPTVIE------RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
                                 |   -  |     23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
                                 9     16                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:184
 aligned with CLPP_STAA8 | Q2G036 from UniProtKB/Swiss-Prot  Length:195

    Alignment length:190
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
           CLPP_STAA8     4 IPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
               SCOP domains d3v5eb      _ B: automated matches                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..------..eehhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeeehhhhhhhh...ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H-------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v5e B   4 IPTVIE------RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
                                 |   -  |     23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
                                 9     16                                                                                                                                                                                 


Chain C from PDB  Type:PROTEIN  Length:184
 aligned with CLPP_STAA8 | Q2G036 from UniProtKB/Swiss-Prot  Length:195

    Alignment length:190
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
           CLPP_STAA8     4 IPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
               SCOP domains d3v5ec      _ C: automated matches                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..------..eehhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeehhhhhhhh....ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H-------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v5e C   4 IPTVIE------RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
                                 |   -  |     23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
                                 9     16                                                                                                                                                                                 


Chain D from PDB  Type:PROTEIN  Length:184
 aligned with CLPP_STAA8 | Q2G036 from UniProtKB/Swiss-Prot  Length:195

    Alignment length:190
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
           CLPP_STAA8     4 IPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
               SCOP domains d3v5ed      _ D: automated matches                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..------..eehhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhh......eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeehhhhhhhh....ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H-------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v5e D   4 IPTVIE------RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
                                 |   -  |     23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
                                 9     16                                                                                                                                                                                 


Chain E from PDB  Type:PROTEIN  Length:184
 aligned with CLPP_STAA8 | Q2G036 from UniProtKB/Swiss-Prot  Length:195

    Alignment length:190
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
           CLPP_STAA8     4 IPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
               SCOP domains d3v5ee      _ E: automated matches                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..------..eehhhhhhh..eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhh......eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeehhhhhhhh....ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H-------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v5e E   4 IPTVIE------RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
                                 |   -  |     23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
                                 9     16                                                                                                                                                                                 


Chain F from PDB  Type:PROTEIN  Length:184
 aligned with CLPP_STAA8 | Q2G036 from UniProtKB/Swiss-Prot  Length:195

    Alignment length:190
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
           CLPP_STAA8     4 IPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
               SCOP domains d3v5ef      _ F: automated matches                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..------..eehhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeehhhhhhhhh...ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H-------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v5e F   4 IPTVIE------RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
                                 |   -  |     23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
                                 9     16                                                                                                                                                                                 


Chain G from PDB  Type:PROTEIN  Length:184
 aligned with CLPP_STAA8 | Q2G036 from UniProtKB/Swiss-Prot  Length:195

    Alignment length:190
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
           CLPP_STAA8     4 IPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
               SCOP domains d3v5eg      _ G: automated matches                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..------..eehhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeehhhhhhhh....ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H-------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v5e G   4 IPTVIE------RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
                                 |   -  |     23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
                                 9     16                                                                                                                                                                                 


Chain H from PDB  Type:PROTEIN  Length:184
 aligned with CLPP_STAA8 | Q2G036 from UniProtKB/Swiss-Prot  Length:195

    Alignment length:190
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
           CLPP_STAA8     4 IPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
               SCOP domains d3v5eh      _ H: automated matches                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..------..eehhhhhhh..eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeehhhhhhhh....ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H-------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v5e H   4 IPTVIE------RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
                                 |   -  |     23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
                                 9     16                                                                                                                                                                                 


Chain I from PDB  Type:PROTEIN  Length:184
 aligned with CLPP_STAA8 | Q2G036 from UniProtKB/Swiss-Prot  Length:195

    Alignment length:190
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
           CLPP_STAA8     4 IPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
               SCOP domains d3v5ei      _ I: automated matches                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..------..eehhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhh......eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeehhhhhhhh....ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H-------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v5e I   4 IPTVIE------RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
                                 |   -  |     23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
                                 9     16                                                                                                                                                                                 


Chain J from PDB  Type:PROTEIN  Length:184
 aligned with CLPP_STAA8 | Q2G036 from UniProtKB/Swiss-Prot  Length:195

    Alignment length:190
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
           CLPP_STAA8     4 IPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
               SCOP domains d3v5ej      _ J: automated matches                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..------..eehhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeehhhhhhhh....ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H-------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v5e J   4 IPTVIE------RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
                                 |   -  |     23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
                                 9     16                                                                                                                                                                                 


Chain K from PDB  Type:PROTEIN  Length:184
 aligned with CLPP_STAA8 | Q2G036 from UniProtKB/Swiss-Prot  Length:195

    Alignment length:190
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
           CLPP_STAA8     4 IPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
               SCOP domains d3v5ek      _ K: automated matches                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..------..eehhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeehhhhhhhh....ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H-------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v5e K   4 IPTVIE------RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
                                 |   -  |     23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
                                 9     16                                                                                                                                                                                 


Chain L from PDB  Type:PROTEIN  Length:184
 aligned with CLPP_STAA8 | Q2G036 from UniProtKB/Swiss-Prot  Length:195

    Alignment length:190
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
           CLPP_STAA8     4 IPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
               SCOP domains d3v5el      _ L: automated matches                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..------..eehhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeehhhhhhhh....ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H-------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v5e L   4 IPTVIE------RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
                                 |   -  |     23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
                                 9     16                                                                                                                                                                                 


Chain M from PDB  Type:PROTEIN  Length:184
 aligned with CLPP_STAA8 | Q2G036 from UniProtKB/Swiss-Prot  Length:195

    Alignment length:190
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
           CLPP_STAA8     4 IPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
               SCOP domains d3v5em      _ M: automated matches                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..------..eehhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhh......eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeehhhhhhhh....ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H-------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v5e M   4 IPTVIE------RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
                                 |   -  |     23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
                                 9     16                                                                                                                                                                                 


Chain N from PDB  Type:PROTEIN  Length:184
 aligned with CLPP_STAA8 | Q2G036 from UniProtKB/Swiss-Prot  Length:195

    Alignment length:190
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
           CLPP_STAA8     4 IPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
               SCOP domains d3v5en      _ N: automated matches                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..------..eehhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhh......eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeeehhhhhhh....ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H-------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v5e N   4 IPTVIE------RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193
                                 |   -  |     23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
                                 9     16
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 14)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3V5E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3V5E)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N   (CLPP_STAA8 | Q2G036)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  3v5e
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLPP_STAA8 | Q2G036: 3qwd 3v5i 4mxi 5c90 5vz2

(-) Related Entries Specified in the PDB File

3qwd CRYSTAL STRUCTURE OF CLPP FROM STAPHYLOCOCCUS AUREUS
3v5i