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(-) Description

Title :  CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM HAEMOPHILUS INFLUENZAE IN COMPLEX WITH PHOSPHONOACETAMIDE
 
Authors :  T. C. Broussard, S. Pakhomova, D. B. Neau, T. S. Champion, R. J. Bonnot, G. L. Waldrop
Date :  23 Sep 13  (Deposition) - 14 Jan 15  (Release) - 01 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.77
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  A  (1x)
Keywords :  Atp-Grasp, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. C. Broussard, S. Pakhomova, D. B. Neau, R. Bonnot, G. L. Waldrop
Structural Analysis Of Substrate, Reaction Intermediate, An Product Binding In Haemophilus Influenzae Biotin Carboxylase.
Biochemistry V. 54 3860 2015
PubMed-ID: 26020841  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B00340

(-) Compounds

Molecule 1 - BIOTIN CARBOXYLASE
    Chains: A
    EC Number: 6.3.4.14, 6.4.1.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ACCC, HI_0972
    Organism Scientific: HAEMOPHILUS INFLUENZAE
    Organism Taxid: 71421
    Strain: ATCC 51907 / DSM 11121 / KW20 / RD
    Synonym: ACETYL-COA CARBOXYLASE SUBUNIT A, ACC

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A
Biological Unit 2 (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2PCT1Ligand/IonPHOSPHONOACETAMIDE
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1EDO6Ligand/Ion1,2-ETHANEDIOL
2PCT2Ligand/IonPHOSPHONOACETAMIDE
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2PCT1Ligand/IonPHOSPHONOACETAMIDE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:1 , LEU A:2 , ALA A:317BINDING SITE FOR RESIDUE EDO A 501
2AC2SOFTWAREALA A:341 , PRO A:349 , PRO A:351 , VAL A:377 , PRO A:378 , PRO A:379 , SER A:383BINDING SITE FOR RESIDUE EDO A 502
3AC3SOFTWARESER A:359 , PRO A:360 , GLY A:361 , TRP A:367 , HOH A:628BINDING SITE FOR RESIDUE EDO A 503
4AC4SOFTWARELYS A:238 , ARG A:292 , GLN A:294 , VAL A:295 , GLU A:296 , ARG A:338 , HOH A:654 , HOH A:748BINDING SITE FOR RESIDUE PCT A 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MV6)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Tyr A:154 -Pro A:155
2Ala A:243 -Pro A:244

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MV6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MV6)

(-) Exons   (0, 0)

(no "Exon" information available for 4MV6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:412
                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..hhhhhhhhhhhhhhh..eeeeeee.hhh.hhhhhhh.eeeeee..hhhhh..hhhhhhhhhhhhh..eee........hhhhhhhhhhh..ee...hhhhhhhh.hhhhhhhhhhhhh........hhhhhhh............hhhhhhhhhhh..........eeeeeeeee.....eeeeeeeeeeeee..eeeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeeeeeeee..eeeeeeee.....hhhhhhhhhh.hhhhhhhhhhh......hhhhh....eeeeeeee...........ee..eee......eeee.......ee......eeeeeeeee.hhhhhhhhhhhhhhhheee....hhhhhhhhhhhhhhhhh....hhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mv6 A   1 MLEKVVIANRGEIALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPAPSAKSYLNIPAIIAAAEVTGADAIHPGYGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVPGSKEIAKRIGYPIIIRVVRSEDALEESIAMTKAVYMEKYLENPRHVEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITEEVRRDIGSRCANACVEIGYRGAGTFEFLYENGEFYFIEMNTRIQVEHPVTEMITGVDLVKEQLRIAAGLPISFKQEDIKVKGHAMECRINAEDPKTFLPSPGKVNHLHSPGGLGVRWDSHVYGGYTVPPHYDSMIAKLITYGDTREVAIRRMQNALSETIIDGIKTNIPLHELILEDENFQKGGTNIHYLEKKL 444
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   ||  151      |172       182    || 202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442  
                                                                                                                                                               134|         158|              187|                                                                                                                                                                                                                                                      
                                                                                                                                                                146          170               198
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MV6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MV6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MV6)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACCC_HAEIN | P43873: 4mv1 4mv3 4mv4 4mv7 4mv8 4mv9 4rzq

(-) Related Entries Specified in the PDB File

1dv1 BIOTIN CARBOXYLASE
2vr1 BIOTIN CARBOXYLASE WITH ADPCF2P
4mv1
4mv3
4mv4
4mv7
4mv8
4mv9