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(-) Description

Title :  CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM HAEMOPHILUS INFLUENZAE IN COMPLEX WITH AMPPCP AND BICARBONATE
 
Authors :  T. C. Broussard, S. Pakhomova, D. B. Neau, T. S. Champion, R. J. Bonnot, G. L. Waldrop
Date :  23 Sep 13  (Deposition) - 14 Jan 15  (Release) - 01 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.69
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  A  (1x)
Keywords :  Atp-Grasp, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. C. Broussard, S. Pakhomova, D. B. Neau, R. Bonnot, G. L. Waldrop
Structural Analysis Of Substrate, Reaction Intermediate, An Product Binding In Haemophilus Influenzae Biotin Carboxylase.
Biochemistry V. 54 3860 2015
PubMed-ID: 26020841  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B00340

(-) Compounds

Molecule 1 - BIOTIN CARBOXYLASE
    Chains: A
    EC Number: 6.3.4.14, 6.4.1.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ACCC, HI_0972
    Organism Scientific: HAEMOPHILUS INFLUENZAE
    Organism Taxid: 71421
    Strain: ATCC 51907 / DSM 11121 / KW20 / RD
    Synonym: ACETYL-COA CARBOXYLASE SUBUNIT A, ACC

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A
Biological Unit 2 (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
1ACP1Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2BCT1Ligand/IonBICARBONATE ION
3EDO1Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
1ACP2Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2BCT2Ligand/IonBICARBONATE ION
3EDO2Ligand/Ion1,2-ETHANEDIOL
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
1ACP1Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2BCT1Ligand/IonBICARBONATE ION
3EDO1Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:159 , MET A:169 , GLU A:201 , LYS A:202 , TYR A:203 , LEU A:204 , GLU A:276 , LEU A:278 , GLU A:288 , ASN A:290 , HOH A:746BINDING SITE FOR RESIDUE ACP A 501
2AC2SOFTWARESER A:359 , PRO A:360 , GLY A:361 , TRP A:367 , HOH A:621BINDING SITE FOR RESIDUE EDO A 502
3AC3SOFTWAREARG A:292 , GLN A:294 , VAL A:295 , GLU A:296 , ARG A:338 , HOH A:857BINDING SITE FOR RESIDUE BCT A 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MV3)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Tyr A:154 -Pro A:155
2Ala A:243 -Pro A:244

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MV3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MV3)

(-) Exons   (0, 0)

(no "Exon" information available for 4MV3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:439
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..hhhhhhhhhhhhhhhh.eeeeeee.hhh.hhhhhhh.eeeeee..hhhhh..hhhhhhhhhhhhh..eee........hhhhhhhhhhh..ee...hhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhh..eeeee..eeee.hhhhhhhhhhhhhhhhhhhh....eeeee.....eeeeeeeee.....eeeeeeeeeeeee..eeeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeeeeeeee..eeeeeeee.....hhhhhhhhhh.hhhhhhhhhhh......hhhhh....eeeeeeee...........ee..eee......eeee.......ee......eeeeeeeee.hhhhhhhhhhhhhhhheee....hhhhhhhhhhhhhhhhh....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mv3 A   1 MLEKVVIANRGEIALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPAPSAKSYLNIPAIIAAAEVTGADAIHPGYGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVPGSDGPVSNDIAKNKEIAKRIGYPIIIKASGMRVVRSEDALEESIAMTKAEAKAAFNNDMVYMEKYLENPRHVEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITEEVRRDIGSRCANACVEIGYRGAGTFEFLYENGEFYFIEMNTRIQVEHPVTEMITGVDLVKEQLRIAAGLPISFKQEDIKVKGHAMECRINAEDPKTFLPSPGKVNHLHSPGGLGVRWDSHVYGGYTVPPHYDSMIAKLITYGDTREVAIRRMQNALSETIIDGIKTNIPLHELILEDENFQKGGTNIHYLEKKLG 445
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160||     176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436         
                                                                                                                                                                                          161|                                                                                                                                                                                                                                                                                     
                                                                                                                                                                                           168
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MV3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MV3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MV3)

(-) Gene Ontology  (11, 11)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACCC_HAEIN | P43873: 4mv1 4mv4 4mv6 4mv7 4mv8 4mv9 4rzq

(-) Related Entries Specified in the PDB File

1dv1 BIOTIN CARBOXYLASE
2vr1 BIOTIN CARBOXYLASE WITH ADPCF2P
4mv1
4mv4
4mv6
4mv7
4mv8
4mv9