4MV4 - JenaLib

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Title :   CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM HAEMOPHILUS INFLUENZAE IN COMPLEX WITH AMPPCP AND MG2

Authors :   T. C. Broussard, S. Pakhomova, D. B. Neau, T. S. Champion, R. J. Bonnot, G. L. Waldrop

Date :   23 Sep 13 (Deposition) - 14 Jan 15 (Release) - 01 Jul 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.61

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)
Biol. Unit 2: A  (1x)

Keywords :   Atp-Grasp, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. C. Broussard, S. Pakhomova, D. B. Neau, R. Bonnot, G. L. Waldrop
Structural Analysis Of Substrate, Reaction Intermediate, An Product Binding In Haemophilus Influenzae Biotin Carboxylase.
Biochemistry V. 54 3860 2015
PubMed-ID: 26020841 | Reference-DOI: 10.1021/ACS.BIOCHEM.5B00340

Molecule 1 - BIOTIN CARBOXYLASE
	Chains	:	A
	EC Number	:	6.3.4.14, 6.4.1.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	ACCC, HI_0972
	Organism Scientific	:	HAEMOPHILUS INFLUENZAE
	Organism Taxid	:	71421
	Strain	:	ATCC 51907 / DSM 11121 / KW20 / RD
	Synonym	:	ACETYL-COA CARBOXYLASE SUBUNIT A, ACC

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A
Biological Unit 2 (1x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 5)

No.	Name	Count	Type	Full Name
1	ACP	1	Ligand/Ion	PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2	CL	1	Ligand/Ion	CHLORIDE ION
3	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
4	MG	1	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (2, 6)

No.	Name	Count	Type	Full Name
1	ACP	2	Ligand/Ion	PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
4	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	ACP	1	Ligand/Ion	PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
4	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:159 , GLY A:164 , MET A:169 , GLU A:201 , LYS A:202 , TYR A:203 , LEU A:204 , HIS A:236 , LEU A:278 , GLU A:288 , MG A:505 , HOH A:708 , HOH A:901	BINDING SITE FOR RESIDUE ACP A 501
2	AC2	SOFTWARE	LEU A:2	BINDING SITE FOR RESIDUE EDO A 502
3	AC3	SOFTWARE	SER A:359 , PRO A:360 , GLY A:361	BINDING SITE FOR RESIDUE EDO A 503
4	AC4	SOFTWARE	ARG A:292 , GLN A:294 , VAL A:295 , HOH A:745 , HOH A:895	BINDING SITE FOR RESIDUE CL A 504
5	AC5	SOFTWARE	GLU A:276 , GLU A:288 , ASN A:290 , ACP A:501 , HOH A:901	BINDING SITE FOR RESIDUE MG A 505

(no "SS Bond" information available for 4MV4)

Asymmetric Unit

No.	Residues
1	Tyr A:154	-	Pro A:155
2	Ala A:243	-	Pro A:244

(no "SAP(SNP)/Variant" information available for 4MV4)

(no "PROSITE Motif" information available for 4MV4)

(no "Exon" information available for 4MV4)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:442
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..hhhhhhhhhhhhhhhh.eeeeeee.hhh.hhhhhhh.eeeeee..hhhhh..hhhhhhhhhhhhh..eee........hhhhhhhhhhh..ee...hhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhh..eeeee.....eeee.hhhhhhhhhhhhhhhhhhhh....eeeee.....eeeeeeeee.....eeeeeeeeeeeee..eeeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeeeeeeee..eeeeeeee.....hhhhhhhhhh.hhhhhhhhhhh......hhhhh....eeeeeeee...........ee..eee......eeee.......ee......eeeeeeeee.hhhhhhhhhhhhhhhheee....hhhhhhhhhhhhhhhhh....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mv4 A   1 MLEKVVIANRGEIALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPAPSAKSYLNIPAIIAAAEVTGADAIHPGYGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVPGSDGPVSNDIAKNKEIAKRIGYPIIIKASGGGGMRVVRSEDALEESIAMTKAEAKAAFNNDMVYMEKYLENPRHVEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITEEVRRDIGSRCANACVEIGYRGAGTFEFLYENGEFYFIEMNTRIQVEHPVTEMITGVDLVKEQLRIAAGLPISFKQEDIKVKGHAMECRINAEDPKTFLPSPGKVNHLHSPGGLGVRWDSHVYGGYTVPPHYDSMIAKLITYGDTREVAIRRMQNALSETIIDGIKTNIPLHELILEDENFQKGGTNIHYLEKKLG 445
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160   ||  173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443  
                                                                                                                                                                                             164|                                                                                                                                                                                                                                                                                     
                                                                                                                                                                                              168

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4MV4)

(no "CATH Domain" information available for 4MV4)

(no "Pfam Domain" information available for 4MV4)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		EDO	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ala A:243 - Pro A:244	[ RasMol ]
		Tyr A:154 - Pro A:155	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	ACCC_HAEIN \| P43873	:	4mv1 4mv3 4mv6 4mv7 4mv8 4mv9 4rzq

1dv1	BIOTIN CARBOXYLASE
2vr1	BIOTIN CARBOXYLASE WITH ADPCF2P
4mv1
4mv3
4mv6
4mv7
4mv8
4mv9

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 5)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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