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(-) Description

Title :  CRYSTAL STRUCTURE OF ANMK BOUND TO AMPPCP AND ANHMURNAC
 
Authors :  J. P. Bacik, B. L. Mark
Date :  11 Sep 13  (Deposition) - 01 Jan 14  (Release) - 05 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Atpase Domain, Kinase, Atp Binding, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. P. Bacik, M. Tavassoli, T. R. Patel, S. A. Mckenna, D. J. Vocadlo, M. Khajehpour, B. L. Mark
Conformational Itinerary Of Pseudomonas Aeruginosa 1, 6-Anhydro-N-Acetylmuramic Acid Kinase During Its Catalyti Cycle.
J. Biol. Chem. V. 289 4504 2014
PubMed-ID: 24362022  |  Reference-DOI: 10.1074/JBC.M113.521633

(-) Compounds

Molecule 1 - ANHYDRO-N-ACETYLMURAMIC ACID KINASE
    Chains: A, B, C, D
    EC Number: 2.7.1.170
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ANMK, PA0666
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Synonym: ANHMURNAC KINASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
1ACP4Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2AH04Ligand/Ion2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID
3MG1Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1ACP2Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2AH02Ligand/Ion2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1ACP2Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2AH02Ligand/Ion2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:97 , HIS A:100 , ARG A:129 , ALA A:140 , PRO A:141 , LEU A:142 , VAL A:143 , GLU A:326 , HOH A:528 , HOH A:530 , HOH A:534BINDING SITE FOR RESIDUE AH0 A 401
2AC2SOFTWAREGLY A:164 , ASN A:187 , ASP A:191 , PHE A:202 , ASP A:203 , ARG A:204 , ASP A:205 , GLY A:292 , PHE A:295 , HOH A:605 , HOH A:718BINDING SITE FOR RESIDUE ACP A 402
3AC3SOFTWAREHIS B:94 , THR B:97 , HIS B:100 , ARG B:129 , ALA B:140 , PRO B:141 , LEU B:142 , VAL B:143 , HOH B:522 , HOH B:526 , HOH B:591 , HOH B:617BINDING SITE FOR RESIDUE AH0 B 401
4AC4SOFTWARESER B:12 , GLY B:164 , GLY B:165 , ASN B:187 , ASP B:191 , PHE B:202 , ASP B:203 , ASP B:205 , GLY B:291 , GLY B:292 , PHE B:295 , HOH B:518 , HOH B:637 , HOH B:686BINDING SITE FOR RESIDUE ACP B 402
5AC5SOFTWARETHR C:11 , THR C:97 , HIS C:100 , ARG C:129 , ALA C:140 , PRO C:141 , LEU C:142 , VAL C:143 , HOH C:516 , HOH C:544 , HOH C:549 , HOH C:620 , HOH C:652BINDING SITE FOR RESIDUE AH0 C 401
6AC6SOFTWAREGLY C:164 , GLY C:165 , ASN C:187 , ASP C:191 , PHE C:202 , ASP C:203 , ARG C:204 , ASP C:205 , GLY C:292 , PHE C:295 , HOH C:509 , HOH C:556 , HOH C:700 , HOH C:728 , HOH C:757BINDING SITE FOR RESIDUE ACP C 402
7AC7SOFTWARETHR D:11 , THR D:97 , HIS D:100 , ARG D:129 , ALA D:140 , PRO D:141 , LEU D:142 , VAL D:143 , HOH D:528 , HOH D:581 , HOH D:619 , HOH D:622 , HOH D:754BINDING SITE FOR RESIDUE AH0 D 401
8AC8SOFTWARESER D:12 , ASP D:14 , GLY D:164 , GLY D:165 , ASN D:187 , ASP D:191 , PHE D:202 , ASP D:203 , ARG D:204 , ASP D:205 , GLY D:292 , PHE D:295 , MG D:403 , HOH D:554 , HOH D:564 , HOH D:595 , HOH D:661 , HOH D:701 , HOH D:711 , HOH D:757 , HOH D:808 , HOH D:821BINDING SITE FOR RESIDUE ACP D 402
9AC9SOFTWAREACP D:402 , HOH D:564 , HOH D:661 , HOH D:701 , HOH D:853BINDING SITE FOR RESIDUE MG D 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MO5)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ala A:140 -Pro A:141
2Ala B:140 -Pro B:141
3Ala C:140 -Pro C:141
4Ala D:140 -Pro D:141

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MO5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MO5)

(-) Exons   (0, 0)

(no "Exon" information available for 4MO5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:345
                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eeeeeeeee...eeeeeeeeee..hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhh..eeee..eeeeeehhh.eeeee..hhhhhhhh...eee.hhhhhhhh......hhhhhhhhhh......eeeeee..eeeeeee......eeeeeee.hhhhhhhhhhhh.....hhhhhhhh....hhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.....eeeee.hhhh.hhhhhhhhhh....eeeehhhh.....hhhhhhhhhhhhhhhh......hhhh.........e.e..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mo5 A   2 PRYLGLMSGTSLDGMDIVLIEQGDRTTLLASHYLPMPAGLREDILALCVPGPDEIARAAEVEQRWVALAAQGVRELLLQQQMSPDEVRAIGSHGQTIRHEPARHFTVQIGNPALLAELTGIDVVADFRRRDVAAGGQGAPLVPAFHQALFGDDDTSRAVLNIGGFSNVSLLSPGKPVRGFDCGPGNVLMDAWIHHQRGEHFDRDGAWAASGQVNHALLASLLAFNLPWLQEHLARHAADIQATLLELSARSISESLLDAQPDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAFAWLAHRFLERLPGNCPDVTGALGPRTLGALYPAGSH 366
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221  ||   247     ||261       271       281       291       301       311       321       331       341       351       361     
                                                                                                                                                                                                                                                        224|         253|                                                                                                            
                                                                                                                                                                                                                                                         241          258                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:350
                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eeeeeeeee...eeeeeeeeee..hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhh..eeee..eeeeeehhh.eeeee..hhhhhhhh...eee.hhhhhhhh......hhhhhhhhhh......eeeeee..eeeeeee......eeeeeee.hhhhhhhhhhhh.....hhhhhhhh....hhhhhhhhh..hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.....eeeee.hhhh.hhhhhhhhhh....eeeehhhh.....hhhhhhhhhhhhhhhh......hhhh.........eee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mo5 B   2 PRYLGLMSGTSLDGMDIVLIEQGDRTTLLASHYLPMPAGLREDILALCVPGPDEIARAAEVEQRWVALAAQGVRELLLQQQMSPDEVRAIGSHGQTIRHEPARHFTVQIGNPALLAELTGIDVVADFRRRDVAAGGQGAPLVPAFHQALFGDDDTSRAVLNIGGFSNVSLLSPGKPVRGFDCGPGNVLMDAWIHHQRGEHFDRDGAWAASGQVNHALLASLLAFNLPWLQEHLARHPALPAADIQATLLELSARSISESLLDAQPDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAFAWLAHRFLERLPGNCPDVTGALGPRTLGALYPAGSHH 367
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221  ||   247       257       267       277       287       297       307       317       327       337       347       357       367
                                                                                                                                                                                                                                                        224|                                                                                                                              
                                                                                                                                                                                                                                                         241                                                                                                                              


Chain C from PDB  Type:PROTEIN  Length:351
                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eeeeeeeee...eeeeeeeeee..hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhh..eeee..eeeeeehhh.eeeee..hhhhhhhh...eee.hhhhhhhh......hhhhhhhhhh......eeeeee..eeeeeee......eeeeeee.hhhhhhhhhhhh.....hhhhhhhh....hhhhhhhhh......hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.....eeeee.hhhh.hhhhhhhhhh....eeeehhhh.....hhhhhhhhhhhhhhhh......hhhh.........e.e... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mo5 C   2 PRYLGLMSGTSLDGMDIVLIEQGDRTTLLASHYLPMPAGLREDILALCVPGPDEIARAAEVEQRWVALAAQGVRELLLQQQMSPDEVRAIGSHGQTIRHEPARHFTVQIGNPALLAELTGIDVVADFRRRDVAAGGQGAPLVPAFHQALFGDDDTSRAVLNIGGFSNVSLLSPGKPVRGFDCGPGNVLMDAWIHHQRGEHFDRDGAWAASGQVNHALLASLLADEFFFNLPWLQEHLARHPALPAADIQATLLELSARSISESLLDAQPDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAFAWLAHRFLERLPGNCPDVTGALGPRTLGALYPAG 364
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221      |243       253       263       273       283       293       303       313       323       333       343       353       363 
                                                                                                                                                                                                                                                            228|                                                                                                                           
                                                                                                                                                                                                                                                             241                                                                                                                           


Chain D from PDB  Type:PROTEIN  Length:352
                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eeeeeeeee...eeeeeeeeee..hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhh..eeee..eeeeeehhh.eeeee..hhhhhhhh...eee.hhhhhhhh......hhhhhhhhhh......eeeeee..eeeeeee......eeeeeee.hhhhhhhhhhhh.....hhhhhhhh....hhhhhhhhh.......hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.....eeeee.hhhh.hhhhhhhhhh....eeeehhhh.....hhhhhhhhhhhhhhhh......hhhh.........eee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mo5 D   2 PRYLGLMSGTSLDGMDIVLIEQGDRTTLLASHYLPMPAGLREDILALCVPGPDEIARAAEVEQRWVALAAQGVRELLLQQQMSPDEVRAIGSHGQTIRHEPARHFTVQIGNPALLAELTGIDVVADFRRRDVAAGGQGAPLVPAFHQALFGDDDTSRAVLNIGGFSNVSLLSPGKPVRGFDCGPGNVLMDAWIHHQRGEHFDRDGAWAASGQVNHALLASLLADEFFRFNLPWLQEHLARHPALPAADIQATLLELSARSISESLLDAQPDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAFAWLAHRFLERLPGNCPDVTGALGPRTLGALYPAG 364
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221      |242       252       262       272       282       292       302       312       322       332       342       352       362  
                                                                                                                                                                                                                                                            228|                                                                                                                            
                                                                                                                                                                                                                                                             240
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MO5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MO5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MO5)

(-) Gene Ontology  (10, 10)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        ANMK_PSEAE | Q9I5Q5: 3qbw 3qbx 4mo4

(-) Related Entries Specified in the PDB File

4mo4