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(-) Description

Title :  CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA 1,6-ANHYDRO-N-ACTETYLMURAMIC ACID KINASE (ANMK) BOUND TO 1,6-ANHYDRO-N-ACTETYLMURAMIC ACID
 
Authors :  J. P. Bacik, D. R. Martin, B. L. Mark
Date :  14 Jan 11  (Deposition) - 02 Feb 11  (Release) - 20 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Acetate And Sugar Kinases, Hsp70, Actin Superfamily, Kinase, 1, 6- Anhydro-N-Actetylmuramic Acid Binding, Glycoside Hydrolase, Atp- Binding, Carbohydrate Metabolism, Peptidoglycan Recycling, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. P. Bacik, G. E. Whitworth, K. A. Stubbs, A. K. Yadav, D. R. Martin, B. A. Bailey-Elkin, D. J. Vocadlo, B. L. Mark
Molecular Basis Of 1, 6-Anhydro Bond Cleavage And Phosphoryl Transfer By Pseudomonas Aeruginosa 1, 6-Anhydro-N-Acetylmuramic Acid Kinase.
J. Biol. Chem. V. 286 12283 2011
PubMed-ID: 21288904  |  Reference-DOI: 10.1074/JBC.M110.198317

(-) Compounds

Molecule 1 - ANHYDRO-N-ACETYLMURAMIC ACID KINASE
    ChainsA, B
    EC Number2.7.1.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneANMK, PA0666
    Organism ScientificPSEUDOMONAS AERUGINOSA
    Organism Taxid287
    SynonymANHMURNAC KINASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1AH02Ligand/Ion2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID
2SO42Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:97 , HIS A:100 , ARG A:129 , ALA A:140 , PRO A:141 , LEU A:142 , VAL A:143 , PHE A:166 , ASN A:168 , ASP A:182 , GLU A:326 , HOH A:394BINDING SITE FOR RESIDUE AH0 A 653
2AC2SOFTWAREGLY A:10 , THR A:11 , SER A:12 , GLY A:164 , GLY A:165 , HOH A:412 , HOH A:443BINDING SITE FOR RESIDUE SO4 A 372
3AC3SOFTWARETHR B:97 , HIS B:100 , ARG B:129 , ALA B:140 , PRO B:141 , LEU B:142 , VAL B:143 , PHE B:166 , ASN B:168 , ASP B:182 , GLU B:326 , HOH B:387 , HOH B:409BINDING SITE FOR RESIDUE AH0 B 654
4AC4SOFTWAREGLY B:10 , THR B:11 , SER B:12 , GLY B:165 , HOH B:406 , HOH B:409 , HOH B:419 , HOH B:425BINDING SITE FOR RESIDUE SO4 B 372

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3QBX)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ala A:140 -Pro A:141
2Ala B:140 -Pro B:141

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3QBX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3QBX)

(-) Exons   (0, 0)

(no "Exon" information available for 3QBX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:353
 aligned with ANMK_PSEAE | Q9I5Q5 from UniProtKB/Swiss-Prot  Length:363

    Alignment length:362
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361  
           ANMK_PSEAE     2 PRYLGLMSGTSLDGMDIVLIEQGDRTTLLASHYLPMPAGLREDILALCVPGPDEIARAAEVEQRWVALAAQGVRELLLQQQMSPDEVRAIGSHGQTIRHEPARHFTVQIGNPALLAELTGIDVVADFRRRDVAAGGQGAPLVPAFHQALFGDDDTSRAVLNIGGFSNVSLLSPGKPVRGFDCGPGNVLMDAWIHHQRGEHFDRDGAWAASGQVNHALLASLLADEFFAARGPKSTGRERFNLPWLQEHLARHPALPAADIQATLLELSARSISESLLDAQPDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAFAWLAHRFLERLPGNCPDVTGALGPRTLGALYPA 363
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....eeeeeeeee...eeeeeeeeee..hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh....hhh..eeee..eeeeee....eeeee..hhhhhhhh...eee...hhhhh.........hhhhhhhh.----.eeeeee..eeeeeee......eeeeeee..hhhhhhhhhh..................hhhhhhhh..hhhh.............hhhhhhh.-----..hhhhhhhhhhhhhhhhhhhhhhh.....eeeee.hhhh.hhhhhhhhhh....eeeehhhh......hhhhhhhhhhhhhh.......hhhh.........eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qbx A   2 PRYLGLMSGTSLDGMDIVLIEQGDRTTLLASHYLPMPAGLREDILALCVPGPDEIARAAEVEQRWVALAAQGVRELLLQQQMSPDEVRAIGSHGQTIRHEPARHFTVQIGNPALLAELTGIDVVADFRRRDVAAGGQGAPLVPAFHQALFG----SRAVLNIGGFSNVSLLSPGKPVRGFDCGPGNVLMDAWIHHQRGEHFDRDGAWAASGQVNHALLASLLADEFFAARGPKSTGRERFNLPWLQEHL-----LPAADIQATLLELSARSISESLLDAQPDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAFAWLAHRFLERLPGNCPDVTGALGPRTLGALYPA 363
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151|    | 161       171       181       191       201       211       221       231       241        |-    |  261       271       281       291       301       311       321       331       341       351       361  
                                                                                                                                                                                152  157                                                                                          250   256                                                                                                           

Chain B from PDB  Type:PROTEIN  Length:362
 aligned with ANMK_PSEAE | Q9I5Q5 from UniProtKB/Swiss-Prot  Length:363

    Alignment length:362
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361  
           ANMK_PSEAE     2 PRYLGLMSGTSLDGMDIVLIEQGDRTTLLASHYLPMPAGLREDILALCVPGPDEIARAAEVEQRWVALAAQGVRELLLQQQMSPDEVRAIGSHGQTIRHEPARHFTVQIGNPALLAELTGIDVVADFRRRDVAAGGQGAPLVPAFHQALFGDDDTSRAVLNIGGFSNVSLLSPGKPVRGFDCGPGNVLMDAWIHHQRGEHFDRDGAWAASGQVNHALLASLLADEFFAARGPKSTGRERFNLPWLQEHLARHPALPAADIQATLLELSARSISESLLDAQPDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAFAWLAHRFLERLPGNCPDVTGALGPRTLGALYPA 363
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) UPF0075-3qbxB01 B:2-363                                                                                                                                                                                                                                                                                                                                                    Pfam domains (1)
           Pfam domains (2) UPF0075-3qbxB02 B:2-363                                                                                                                                                                                                                                                                                                                                                    Pfam domains (2)
         Sec.struct. author .eeeeeee.....eeeeeeeee...eeeeeeeeee..hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh....hhh..eeee..eeeeee....eeeee..hhhhhhhh...eee...hhhhh.........hhhhhhhh......eeeeee..eeeeeee......eeeeeee..hhhhhhhhhhh.................hhhhhhhh..hhhh.............hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.....eeeee.hhhh.hhhhhhhhhh....eeeehhhh...hhhhhhhhhhhhhhhhh.......hhhh.........eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qbx B   2 PRYLGLMSGTSLDGMDIVLIEQGDRTTLLASHYLPMPAGLREDILALCVPGPDEIARAAEVEQRWVALAAQGVRELLLQQQMSPDEVRAIGSHGQTIRHEPARHFTVQIGNPALLAELTGIDVVADFRRRDVAAGGQGAPLVPAFHQALFGDDDTSRAVLNIGGFSNVSLLSPGKPVRGFDCGPGNVLMDAWIHHQRGEHFDRDGAWAASGQVNHALLASLLADEFFAARGPKSTGRERFNLPWLQEHLARHPALPAADIQATLLELSARSISESLLDAQPDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAFAWLAHRFLERLPGNCPDVTGALGPRTLGALYPA 363
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3QBX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3QBX)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (ANMK_PSEAE | Q9I5Q5)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016773    phosphotransferase activity, alcohol group as acceptor    Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0097175    1,6-anhydro-N-acetyl-beta-muramic acid catabolic process    The chemical reactions and pathways resulting in the breakdown of 1,6-anhydro-N-acetylmuramic acid, the 1,6-anhydro-derivative of N-acetyl-beta-muramic acid.
    GO:0006040    amino sugar metabolic process    The chemical reactions and pathways involving any amino sugar, sugars containing an amino group in place of a hydroxyl group.
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0009254    peptidoglycan turnover    The continual breakdown and regeneration of peptidoglycan required to maintain the cell wall.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ANMK_PSEAE | Q9I5Q53qbw 4mo4 4mo5

(-) Related Entries Specified in the PDB File

3qbw