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(-) Description

Title :  CRYSTAL STRUCTURE OF ANMK BOUND TO AMPPCP
 
Authors :  J. P. Bacik, B. L. Mark
Date :  11 Sep 13  (Deposition) - 01 Jan 14  (Release) - 05 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.67
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Atpase Domain, Kinase, Atp-Binding, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. P. Bacik, M. Tavassoli, T. R. Patel, S. A. Mckenna, D. J. Vocadlo, M. Khajehpour, B. L. Mark
Conformational Itinerary Of Pseudomonas Aeruginosa 1, 6-Anhydro-N-Acetylmuramic Acid Kinase During Its Catalyti Cycle.
J. Biol. Chem. V. 289 4504 2014
PubMed-ID: 24362022  |  Reference-DOI: 10.1074/JBC.M113.521633

(-) Compounds

Molecule 1 - ANHYDRO-N-ACETYLMURAMIC ACID KINASE
    Chains: A, B, C, D
    EC Number: 2.7.1.170
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ANMK, PA0666
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Synonym: ANHMURNAC KINASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1ACP4Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1ACP2Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1ACP2Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:164 , ASN A:187 , ASP A:191 , PHE A:202 , ASP A:203 , ARG A:204 , ASP A:205 , GLY A:291 , GLY A:292 , PHE A:295 , HOH A:655 , HOH A:688 , HOH A:865BINDING SITE FOR RESIDUE ACP A 500
2AC2SOFTWARESER B:12 , GLY B:165 , ASN B:187 , ASP B:191 , PHE B:202 , ASP B:203 , ARG B:204 , ASP B:205 , GLY B:291 , GLY B:292 , PHE B:295 , GLU B:326 , HOH B:624 , HOH B:744 , HOH B:763 , HOH B:775 , HOH B:784 , HOH B:786 , HOH B:787 , HOH B:790BINDING SITE FOR RESIDUE ACP B 500
3AC3SOFTWARESER C:12 , GLY C:164 , GLY C:165 , ASN C:187 , ASP C:191 , PHE C:202 , ASP C:203 , ARG C:204 , ASP C:205 , GLY C:292 , PHE C:295 , ASN C:296 , HOH C:618 , HOH C:764BINDING SITE FOR RESIDUE ACP C 500
4AC4SOFTWAREGLY D:164 , GLY D:165 , ASN D:187 , ASP D:191 , PHE D:202 , ASP D:203 , ARG D:204 , ASP D:205 , GLY D:291 , GLY D:292 , PHE D:295 , ASN D:296 , HOH D:633 , HOH D:811 , HOH D:820 , HOH D:829 , HOH D:926 , HOH D:972BINDING SITE FOR RESIDUE ACP D 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MO4)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ala A:140 -Pro A:141
2Ala B:140 -Pro B:141
3Ala C:140 -Pro C:141
4Ala D:140 -Pro D:141

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MO4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MO4)

(-) Exons   (0, 0)

(no "Exon" information available for 4MO4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:345
                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eeeeeeeee...eeeeeeeeee..hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhh..eeee..eeeeeehhh.eeeee..hhhhhhhh...eee.hhhhhhhh......hhhhhhhhhh......eeeeee..eeeeeee......eeeeeee.hhhhhhhhhhhh.....hhhhhhhh....hhhhhhhhh.hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.....eeeee.hhhh.hhhhhhhhhh....eeeehhhh.....hhhhhhhhhhhhhhhh......hhhh.........e.e.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mo4 A   2 PRYLGLMSGTSLDGMDIVLIEQGDRTTLLASHYLPMPAGLREDILALCVPGPDEIARAAEVEQRWVALAAQGVRELLLQQQMSPDEVRAIGSHGQTIRHEPARHFTVQIGNPALLAELTGIDVVADFRRRDVAAGGQGAPLVPAFHQALFGDDDTSRAVLNIGGFSNVSLLSPGKPVRGFDCGPGNVLMDAWIHHQRGEHFDRDGAWAASGQVNHALLASLLANLPWLQEHLARHPALPAADIQATLLELSARSISESLLDAQPDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAFAWLAHRFLERLPGNCPDVTGALGPRTLGALYPA 363
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221  ||   248       258       268       278       288       298       308       318       328       338       348       358     
                                                                                                                                                                                                                                                        224|                                                                                                                         
                                                                                                                                                                                                                                                         242                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:348
                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee......eeeeeeeee...eeeeeeeeee..hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhh..eeee..eeeeeehhh.eeeee..hhhhhhhh...eee.hhhhhhhh......hhhhhhhhhh......eeeeee..eeeeeee.....eeeeeeee.hhhhhhhhhhhh.....hhhhhhhh....hhhhhhhh....hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.....eeeee.hhhh.hhhhhhhhhh....eeeehhhh.....hhhhhhhhhhhhhhhh......hhhh.........eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mo4 B   2 PRYLGLMSGTSLDGMDIVLIEQGDRTTLLASHYLPMPAGLREDILALCVPGPDEIARAAEVEQRWVALAAQGVRELLLQQQMSPDEVRAIGSHGQTIRHEPARHFTVQIGNPALLAELTGIDVVADFRRRDVAAGGQGAPLVPAFHQALFGDDDTSRAVLNIGGFSNVSLLSPGKPVRGFDCGPGNVLMDAWIHHQRGEHFDRDGAWAASGQVNHALLASLLADFNLPWLQEHLARHPALPAADIQATLLELSARSISESLLDAQPDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAFAWLAHRFLERLPGNCPDVTGALGPRTLGALYPAG 364
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221   ||  246       256       266       276       286       296       306       316       326       336       346       356        
                                                                                                                                                                                                                                                         225|                                                                                                                           
                                                                                                                                                                                                                                                          241                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:354
                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee......eeeeeeeee...eeeeeeeeee..hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhh..eeee..eeeeeehhh.eeeee..hhhhhhhh...eee.hhhhhhhh......hhhhhhhhhh......eeeeee..eeeeeee......eeeeeee.hhhhhhhhhhhh.....hhhhhhhh....hhhhhhhhh.........hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.....eeeee.hhhh.hhhhhhhhhh....eeeehhhh.....hhhhhhhhhhhhhhhh......hhhh.........e.e... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mo4 C   2 PRYLGLMSGTSLDGMDIVLIEQGDRTTLLASHYLPMPAGLREDILALCVPGPDEIARAAEVEQRWVALAAQGVRELLLQQQMSPDEVRAIGSHGQTIRHEPARHFTVQIGNPALLAELTGIDVVADFRRRDVAAGGQGAPLVPAFHQALFGDDDTSRAVLNIGGFSNVSLLSPGKPVRGFDCGPGNVLMDAWIHHQRGEHFDRDGAWAASGQVNHALLASLLADEFFRERFNLPWLQEHLARHPALPAADIQATLLELSARSISESLLDAQPDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAFAWLAHRFLERLPGNCPDVTGALGPRTLGALYPAG 364
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221      |240       250       260       270       280       290       300       310       320       330       340       350       360    
                                                                                                                                                                                                                                                            228|                                                                                                                              
                                                                                                                                                                                                                                                             238                                                                                                                              


Chain D from PDB  Type:PROTEIN  Length:353
                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eeeeeeeee...eeeeeeeeee..hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhh..eeee..eeeeeehhh.eeeee..hhhhhhhh...eee.hhhhhhhh......hhhhhhhhhh......eeeeee..eeeeeee......eeeeeee.hhhhhhhhhhhh.....hhhhhhhh....hhhhhhhh.........hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.....eeeee.hhhh.hhhhhhhhhh....eeeehhhh.....hhhhhhhhhhhhhhhh......hhhh.........eee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mo4 D   2 PRYLGLMSGTSLDGMDIVLIEQGDRTTLLASHYLPMPAGLREDILALCVPGPDEIARAAEVEQRWVALAAQGVRELLLQQQMSPDEVRAIGSHGQTIRHEPARHFTVQIGNPALLAELTGIDVVADFRRRDVAAGGQGAPLVPAFHQALFGDDDTSRAVLNIGGFSNVSLLSPGKPVRGFDCGPGNVLMDAWIHHQRGEHFDRDGAWAASGQVNHALLASLLADEFFERFNLPWLQEHLARHPALPAADIQATLLELSARSISESLLDAQPDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAFAWLAHRFLERLPGNCPDVTGALGPRTLGALYPAG 364
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221      |241       251       261       271       281       291       301       311       321       331       341       351       361   
                                                                                                                                                                                                                                                            228|                                                                                                                             
                                                                                                                                                                                                                                                             239
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MO4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MO4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MO4)

(-) Gene Ontology  (10, 10)

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  Cis Peptide Bonds
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    Ala C:140 - Pro C:141   [ RasMol ]  
    Ala D:140 - Pro D:141   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        ANMK_PSEAE | Q9I5Q5: 3qbw 3qbx 4mo5

(-) Related Entries Specified in the PDB File

4mo5