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(-) Description

Title :  THE CRYSTAL STRUCTURE OF PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE ATPASE SUBUNIT OF FRANCISELLA TULARENSIS SUBSP. TULARENSIS SCHU S4 IN COMPLEX WITH AN ADP ANALOG, AMP-CP
 
Authors :  K. Tan, M. Zhou, K. Kwon, W. F. Anderson, A. Joachimiak, Center For Str Genomics Of Infectious Diseases (Csgid)
Date :  16 Aug 13  (Deposition) - 28 Aug 13  (Release) - 21 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.47
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, The Center For Structural Genomics Of Infectious Diseases, Csgid, Niaid, National Institute Of Allergy And Infectious Diseases, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, M. Zhou, K. Kwon, W. F. Anderson, A. Joachimiak
The Crystal Structure Of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit Of Francisella Tularensis Subsp. Tularensis Schu S4 In Complex With An Adp Analog, Amp-Cp
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE, ATPASE SUBUNIT
    Chains: A, B
    EC Number: 4.1.1.21
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG28
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: FTT_0897, PURK
    Organism Scientific: FRANCISELLA TULARENSIS SUBSP. TULARENSIS
    Organism Taxid: 177416
    Strain: SCHU S4

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric/Biological Unit (3, 15)
No.NameCountTypeFull Name
1A122Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
2GOL3Ligand/IonGLYCEROL
3MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:328 , ARG A:334 , HOH A:612 , HOH A:864 , HOH A:939BINDING SITE FOR RESIDUE GOL A 402
2AC2SOFTWARELYS A:207 , GLN A:208 , LEU A:370 , TYR A:371 , PHE A:372 , HOH A:640BINDING SITE FOR RESIDUE GOL A 403
3AC3SOFTWARELYS B:328 , ARG B:334 , HOH B:675 , HOH B:857BINDING SITE FOR RESIDUE GOL B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MAM)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Tyr A:86 -Pro A:87
2Leu A:133 -Pro A:134
3Ala A:216 -Pro A:217
4Tyr B:86 -Pro B:87
5Leu B:133 -Pro B:134
6Ala B:216 -Pro B:217

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MAM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MAM)

(-) Exons   (0, 0)

(no "Exon" information available for 4MAM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:373
                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhh.eeeee......hhhhh.eee.....hhhhhhhhhh...eeee.....hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh......eeee.hhhhhhhhhhhhh..eeeee.........eeee...hhhhhhhhhhh.....eeeee.....eeeeeeeee.....eee...eeeeee..eeeeeee...hhhhhhhhhhhhhhhhhhhh..eeeeeeeeee..eeeeeeee...hhhhhhhhhhh..hhhhhhhhhhh...........eeeeeee....hhhhhhh....eeee.........eeeeeeee..hhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mam A   1 mKIGIIGAGQLARmLSLAGTPLGLEFHCLGKNGDCAEEVVKTVTDIELTKVNDVVAWAKQFDVITFENENISHELIKAINHEVSVYPSAKAIAISQDRLLEKSFmQDHGIATAKFVNIDSLAKLQSAVDDHGLPAILKTRRFGYDGKGQFVIRSQEDITKAWDVLKDAPDGLIYEAFVDFDYEVSQICTADLKGNIAFYPLARNTHKQGIIVESEAPFENVVLAEKAQQIAKILVKEFAYVGTLAIEFFVKGDELIVNEIAPRVHNSGHWSIDGAVTSQFENHVRAIAGLILGDTTSRKTVmLNCIGGmPATKDLAALDRVKIHSYNKEPRKGRKVGHLNLNLNDETDEYQLLQVKKLIALSEEIAGENLYFQ 373
                            |       10   |    20        30        40        50        60        70        80        90       100    |  110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 |     310       320       330       340       350       360       370   
                            |           14-MSE                                                                                    105-MSE                                                                                                                                                                                              302-MSE  |                                                                
                            1-MSE                                                                                                                                                                                                                                                                                                             309-MSE                                                            


Chain B from PDB  Type:PROTEIN  Length:365
                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhh.eeeee......hhhhh.eee.....hhhhhhhhhh...eeee.....hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh......eeee.hhhhhhhhhhhhh..eeeee.........eeee.hhhhhhhhhhhhh.....eeeee.....eeeeeeeee.....eee...eeeeee..eeeeeee...hhhhhhhhhhhhhhhhhhhh..eeeeeeeeee..eeeeeeee...hhhhhhhhhhh..hhhhhhhhhhh...........eeeeeee....hhhhhhh....eeee.........eeeeeeee..hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mam B   1 mKIGIIGAGQLARmLSLAGTPLGLEFHCLGKNGDCAEEVVKTVTDIELTKVNDVVAWAKQFDVITFENENISHELIKAINHEVSVYPSAKAIAISQDRLLEKSFmQDHGIATAKFVNIDSLAKLQSAVDDHGLPAILKTRRFGYDGKGQFVIRSQEDITKAWDVLKDAPDGLIYEAFVDFDYEVSQICTADLKGNIAFYPLARNTHKQGIIVESEAPFENVVLAEKAQQIAKILVKEFAYVGTLAIEFFVKGDELIVNEIAPRVHNSGHWSIDGAVTSQFENHVRAIAGLILGDTTSRKTVmLNCIGGmPATKDLAALDRVKIHSYNKEPRKGRKVGHLNLNLNDETDEYQLLQVKKLIALSEEI 365
                            |       10   |    20        30        40        50        60        70        80        90       100    |  110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 |     310       320       330       340       350       360     
                            1-MSE       14-MSE                                                                                    105-MSE                                                                                                                                                                                              302-MSE  |                                                        
                                                                                                                                                                                                                                                                                                                                              309-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MAM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MAM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MAM)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:216 - Pro A:217   [ RasMol ]  
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    Leu A:133 - Pro A:134   [ RasMol ]  
    Leu B:133 - Pro B:134   [ RasMol ]  
    Tyr A:86 - Pro A:87   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5NGE8_FRATT | Q5NGE8: 4m9u 4ma0 4ma5 5jqw

(-) Related Entries Specified in the PDB File

4m9u APO FORM
4ma0 IN COMPLEX WITH HYDROLYSED ATP
4ma5 IN COMPLEX WITH AMP-PNP RELATED ID: CSGID-IDP04645 RELATED DB: TARGETTRACK