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(-) Description

Title :  THE CRYSTAL STRUCTURE OF PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE ATPASE SUBUNIT OF FRANCISELLA TULARENSIS SUBSP. TULARENSIS SCHU S4 IN COMPLEX WITH AN ATP ANALOG, AMP-PNP.
 
Authors :  K. Tan, M. Zhou, K. Kwon, W. F. Anderson, A. Joachimiak, Center For Str Genomics Of Infectious Diseases (Csgid)
Date :  15 Aug 13  (Deposition) - 28 Aug 13  (Release) - 21 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.81
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, The Center For Structural Genomics Of Infectious Diseases, Csgid, Niaid, National Institute Of Allergy And Infectious Diseases, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, M. Zhou, K. Kwon, W. F. Anderson, A. Joachimiak
The Crystal Structure Of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit Of Francisella Tularensis Subsp. Tularensis Schu S4 In Complex With An Atp Analog, Amp-Pnp.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE, ATPASE SUBUNIT
    Chains: A
    EC Number: 4.1.1.21
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG28
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: FTT_0897, PURK
    Organism Scientific: FRANCISELLA TULARENSIS SUBSP. TULARENSIS
    Organism Taxid: 177416
    Strain: SCHU S4

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 10)

Asymmetric Unit (5, 10)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2FMT1Ligand/IonFORMIC ACID
3GOL1Ligand/IonGLYCEROL
4MSE5Mod. Amino AcidSELENOMETHIONINE
5NA2Ligand/IonSODIUM ION
Biological Unit 1 (4, 16)
No.NameCountTypeFull Name
1ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2FMT2Ligand/IonFORMIC ACID
3GOL2Ligand/IonGLYCEROL
4MSE10Mod. Amino AcidSELENOMETHIONINE
5NA-1Ligand/IonSODIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:121 , GLN A:125BINDING SITE FOR RESIDUE FMT A 402
2AC2SOFTWAREGLU A:37 , VAL A:40 , HOH A:605 , HOH A:630 , HOH A:662BINDING SITE FOR RESIDUE NA A 403
3AC3SOFTWARESER A:95 , GLU A:101 , GLU A:259 , ILE A:260 , HOH A:607 , HOH A:666BINDING SITE FOR RESIDUE NA A 404
4AC4SOFTWAREILE A:272 , ALA A:275 , VAL A:276 , THR A:277 , SER A:278 , GLU A:281 , HOH A:546BINDING SITE FOR RESIDUE GOL A 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MA5)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Tyr A:86 -Pro A:87
2Leu A:133 -Pro A:134
3Ala A:216 -Pro A:217

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MA5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MA5)

(-) Exons   (0, 0)

(no "Exon" information available for 4MA5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:363
                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhh.eeeee......hhhhh.eee.....hhhhhhhhhh...eeee.....hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh......eeee.hhhhhhhhhhhhh..eeeee.........eeee..hhhhhhhhhhhh.....eeeee.....eeeeeeeee.....eee...eeeeee..eeeeeee...hhhhhhhhhhhhhhhhhhhh..eeeeeeeee...eeeeee...hhhhhhhhhhh..hhhhhhhhhhh...........eeeeeee....hhhhhhh....eeee.........eeeeeeee..hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ma5 A   1 mKIGIIGAGQLARmLSLAGTPLGLEFHCLGKNGDCAEEVVKTVTDIELTKVNDVVAWAKQFDVITFENENISHELIKAINHEVSVYPSAKAIAISQDRLLEKSFmQDHGIATAKFVNIDSLAKLQSAVDDHGLPAILKTRRFGYDGKGQFVIRSQEDITKAWDVLKDAPDGLIYEAFVDFDYEVSQICTADLKGNIAFYPLARNTHKQGIIVESEAPFENVVLAEKAQQIAKILVKEFAYVGTLAIEFFVKELIVNEIAPRVHNSGHWSIDGAVTSQFENHVRAIAGLILGDTTSRKTVmLNCIGGmPATKDLAALDRVKIHSYNKEPRKGRKVGHLNLNLNDETDEYQLLQVKKLIALSEEI 365
                            |       10   |    20        30        40        50        60        70        80        90       100    |  110       120       130       140       150       160       170       180       190       200       210       220       230       240       250||     262       272       282       292       302      |312       322       332       342       352       362   
                            |           14-MSE                                                                                    105-MSE                                                                                                                                           251|                                             302-MSE  |                                                        
                            1-MSE                                                                                                                                                                                                                                                    254                                                    309-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MA5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MA5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MA5)

(-) Gene Ontology  (10, 10)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        Q5NGE8_FRATT | Q5NGE8: 4m9u 4ma0 4mam 5jqw

(-) Related Entries Specified in the PDB File

4m9u APO FORM
4ma0 IN COMPLEX WITH HYDROLYSED ATP RELATED ID: CSGID-IDP04645 RELATED DB: TARGETTRACK
4mam