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(-) Description

Title :  EPHA4 ECTODOMAIN COMPLEX WITH EPHRIN A5
 
Authors :  K. Xu, D. Tsvetkova-Robev, Y. Xu, Y. Goldgur, Y. -P. Chan, J. P. Himanen, D. B. Nikolov
Date :  07 Aug 13  (Deposition) - 30 Oct 13  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.13
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Eph Receptor Ephrin Complex, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Xu, D. Tzvetkova-Robev, Y. Xu, Y. Goldgur, Y. P. Chan, J. P. Himanen, D. B. Nikolov
Insights Into Eph Receptor Tyrosine Kinase Activation From Crystal Structures Of The Epha4 Ectodomain And Its Complex With Ephrin-A5.
Proc. Natl. Acad. Sci. Usa V. 110 14634 2013
PubMed-ID: 23959867  |  Reference-DOI: 10.1073/PNAS.1311000110

(-) Compounds

Molecule 1 - EPHRIN TYPE-A RECEPTOR 4
    Chains: A, C, E, G
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Organ: OVARY
    Expression System Strain: HIGH5
    Expression System Taxid: 7111
    Expression System Vector: PACGP67
    Gene: EPHA4, HEK8, SEK, TYRO1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: EPH-LIKE KINASE 8, EK8, HEK8, TYROSINE-PROTEIN KINASE TYRO1, TYROSINE-PROTEIN KINASE RECEPTOR SEK
 
Molecule 2 - EPHRIN-A5
    Chains: B, D, F, H
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Organ: OVARY
    Expression System Strain: HIGH5
    Expression System Taxid: 7111
    Expression System Vector: PACGP67
    Gene: EFNA5, EPLG7, LERK7
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: AL-1, EPH-RELATED RECEPTOR TYROSINE KINASE LIGAND 7, LERK-7

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 19)

Asymmetric Unit (1, 19)
No.NameCountTypeFull Name
1NAG19Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (1, 5)
No.NameCountTypeFull Name
1NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 3 (1, 5)
No.NameCountTypeFull Name
1NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 4 (1, 5)
No.NameCountTypeFull Name
1NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:340BINDING SITE FOR MONO-SACCHARIDE NAG A3401 BOUND TO ASN A 340
02AC2SOFTWAREHIS A:406 , THR A:407 , ASN A:408BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 408 RESIDUES 3402 TO 3403
03AC3SOFTWARETYR B:35 , ASN B:37 , ASN B:40 , PRO B:63 , HIS B:64 , TYR B:65BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 37 RESIDUES 201 TO 202
04AC4SOFTWAREHIS C:406 , ASN C:408BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 408 RESIDUES 601 TO 602
05AC5SOFTWARETYR D:35 , ASN D:37 , ASN D:40 , PRO D:63 , HIS D:64BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 37 RESIDUES 201 TO 202
06AC6SOFTWAREASN E:340 , SER E:343BINDING SITE FOR MONO-SACCHARIDE NAG E3401 BOUND TO ASN E 340
07AC7SOFTWAREALA E:371 , HIS E:406 , ASN E:408BINDING SITE FOR CHAIN E OF SUGAR BOUND TO ASN E 408 RESIDUES 3402 TO 3403
08AC8SOFTWARETYR F:35 , ASN F:37 , SER F:39 , ASN F:40 , PRO F:63 , HIS F:64BINDING SITE FOR CHAIN F OF SUGAR BOUND TO ASN F 37 RESIDUES 201 TO 202
09AC9SOFTWAREASN G:340 , GLU G:341 , ASN G:345BINDING SITE FOR MONO-SACCHARIDE NAG G3401 BOUND TO ASN G 340
10BC1SOFTWAREGLY G:370 , HIS G:406 , ASN G:408BINDING SITE FOR CHAIN G OF SUGAR BOUND TO ASN G 408 RESIDUES 3402 TO 3403
11BC2SOFTWARETYR H:35 , ASN H:37 , ASN H:40 , PRO H:41 , CYS H:62 , PRO H:63 , HIS H:64 , TYR H:65BINDING SITE FOR CHAIN H OF SUGAR BOUND TO ASN H 37 RESIDUES 201 TO 202

(-) SS Bonds  (52, 52)

Asymmetric Unit
No.Residues
1A:118 -A:108
2A:191 -A:73
3A:247 -A:204
4A:260 -A:233
5A:273 -A:262
6A:290 -A:276
7A:307 -A:293
8A:325 -A:309
9A:377 -A:369
10A:380 -A:366
11B:102 -B:62
12B:151 -B:90
13B:164 -B:53
14C:118 -C:108
15C:191 -C:73
16C:247 -C:204
17C:260 -C:233
18C:273 -C:262
19C:290 -C:276
20C:307 -C:293
21C:309 -C:325
22C:377 -C:369
23C:380 -C:366
24D:102 -D:62
25D:151 -D:90
26D:164 -D:53
27E:118 -E:108
28E:191 -E:73
29E:247 -E:204
30E:260 -E:233
31E:273 -E:262
32E:290 -E:276
33E:307 -E:293
34E:325 -E:309
35E:377 -E:369
36E:380 -E:366
37F:102 -F:62
38F:151 -F:90
39F:164 -F:53
40G:118 -G:108
41G:191 -G:73
42G:247 -G:204
43G:260 -G:233
44G:273 -G:262
45G:290 -G:276
46G:307 -G:293
47G:325 -G:309
48G:377 -G:369
49G:380 -G:366
50H:102 -H:62
51H:151 -H:90
52H:164 -H:53

(-) Cis Peptide Bonds  (24, 24)

Asymmetric Unit
No.Residues
1Ser A:48 -Pro A:49
2Gly A:174 -Pro A:175
3Asn A:235 -Asn A:236
4Gly A:355 -Gly A:356
5His A:385 -Tyr A:386
6Thr A:387 -Pro A:388
7Ser C:48 -Pro C:49
8Gly C:174 -Pro C:175
9Asn C:235 -Asn C:236
10Gly C:355 -Gly C:356
11His C:385 -Tyr C:386
12Thr C:387 -Pro C:388
13Ser E:48 -Pro E:49
14Gly E:174 -Pro E:175
15Asn E:235 -Asn E:236
16Gly E:355 -Gly E:356
17His E:385 -Tyr E:386
18Thr E:387 -Pro E:388
19Ser G:48 -Pro G:49
20Gly G:174 -Pro G:175
21Asn G:235 -Asn G:236
22Gly G:355 -Gly G:356
23His G:385 -Tyr G:386
24Thr G:387 -Pro G:388

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M4R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M4R)

(-) Exons   (0, 0)

(no "Exon" information available for 4M4R)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:516
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee..........eee......eeeeee.....eeeeeeee........eeee...ee......eeeeeeeee...............eeeeeeeee.............eeeeeee.....hhhhhhhh....eeeeeee......eeeeeeee...eeeeeeeeeeeeee..eee..eee..ee.......eeeee.ee...eeeeeeeeeeee........eeeeee...eeee..eeee....ee.........ee....ee.........ee.......................eeeeeeee..eeeeeee...........eeeeeeee................eee.........eeeee......eeeeeeeee........hhh.eeeeeee...........eeeeee....eeeee...........eeeeeeee........eeeee...eeee.......eeeeeeeeee..ee......eeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4m4r A  27 PANEVTLLDSRSVQGELGWIASPLEGGWEEVSIMDEKNTPIRTYQVCNVMEPSQNNWLRTDWITREGAQRVYIEIKFTLRDCNSLPGVMGTCKETFNLYYYESDNDKERFIRENQFVKIDTIAADESFTQVDIGDRIMKLNTEIRDVGPLSKKGFYLAFQDVGACIALVSVRVFYKKCPLTVRNLAQFPDTITGADTSSLVEVRGSCVNNSEEKDVPKMYCGADGEWLVPIGNCLCNAGHEERSGECQACKIGYYKALSTDATCAKCPPHSYSVWEGATSCTCDRGFFRADNDAASMPCTRPPSAPLNLISNVNETSVNLEWSSPQNTGGRQDISYNVVCKKCGAGDPSKCRPCGSGVHYTPQQNGLKTTKVSITDLLAHTNYTFEIWAVNGVSKYNPNPDQSVSVTVTTNQAAPSSIALVQAKEVTRYSVALAWLEPDRPNGVILEYEVKYYEKDQNERSYRIVRTAARNTDIKGLNPLTSYVFHVRARTAAGYGDFSEPLEVTTNTVPSRIIGD 542
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536      


Chain B from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains d4m4rb_ B: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee....hhhhh....eeee....eeeee...............eeeeeehhhhhhh.......eeeee...........eeeee.................eeeeeeee..........eeeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m4r B  25 AAAVADRYAVYWNSSNPRFQRGDYHIDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFEFRPGREYFYISSAIPDNGRRSCLKLKVFVRPTNSCM 165
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164 


Chain C from PDB  Type:PROTEIN  Length:516
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee..........eee......eeeeee.....eeeeeeee........eeee...ee......eeeeeeeeee.hhhh.........eeeeeeeee.............eeeeeee...eehhhhhhh.....eeeeeee......eeeeeeee...eeeeeeeeeeeeee..eee..eee..ee.......eeeee.ee...eeeeeeeeeeee....eeeeeeeeee...eeee..eeee....ee.........ee....ee.........ee.......................eeeeeeee..eeeeeee...........eeeeeeeee.......ee......eee.........eeeee......eeeeeeeee........hhh.eeeeeee...........eeeeee....eeeee...........eeeeeeee........eeeee...eeee.......eeeeeeeeee..ee......eeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4m4r C  27 PANEVTLLDSRSVQGELGWIASPLEGGWEEVSIMDEKNTPIRTYQVCNVMEPSQNNWLRTDWITREGAQRVYIEIKFTLRDCNSLPGVMGTCKETFNLYYYESDNDKERFIRENQFVKIDTIAADESFTQVDIGDRIMKLNTEIRDVGPLSKKGFYLAFQDVGACIALVSVRVFYKKCPLTVRNLAQFPDTITGADTSSLVEVRGSCVNNSEEKDVPKMYCGADGEWLVPIGNCLCNAGHEERSGECQACKIGYYKALSTDATCAKCPPHSYSVWEGATSCTCDRGFFRADNDAASMPCTRPPSAPLNLISNVNETSVNLEWSSPQNTGGRQDISYNVVCKKCGAGDPSKCRPCGSGVHYTPQQNGLKTTKVSITDLLAHTNYTFEIWAVNGVSKYNPNPDQSVSVTVTTNQAAPSSIALVQAKEVTRYSVALAWLEPDRPNGVILEYEVKYYEKDQNERSYRIVRTAARNTDIKGLNPLTSYVFHVRARTAAGYGDFSEPLEVTTNTVPSRIIGD 542
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536      


Chain D from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains d4m4rd_ D: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee....hhhhh...eeeee....eeeee...............eeeeeehhhhhhhh.....eeeeee...........eeeee.................eeeeeeee..........eeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m4r D  26 AAVADRYAVYWNSSNPRFQRGDYHIDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFEFRPGREYFYISSAIPDNGRRSCLKLKVFVRPTNSCM 165
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165


Chain E from PDB  Type:PROTEIN  Length:516
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee..........eee......eeeeee.....eeeeeeee........eeee...ee......eeeeeeeee.hhhhh.........eeeeeeeee.............eeeeeee.....hhhhhhhh....eeeeeee......eeeeeeee...eeeeeeeeeeeeee..eee..eee..ee.......eeeee.ee...eeeeeeeeeeee........eeeeee...eeee..eeee....ee.........ee....ee.........ee.......................eeeeeeee..eeeeeee...........eeeeeeee.................ee.........eeee.......eeeeeeeee........hhh.eeeeeee...........eeeeee....eeeee...........eeeeeeee........eeeee...eeee.......eeeeeeeeee..ee......eeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4m4r E  27 PANEVTLLDSRSVQGELGWIASPLEGGWEEVSIMDEKNTPIRTYQVCNVMEPSQNNWLRTDWITREGAQRVYIEIKFTLRDCNSLPGVMGTCKETFNLYYYESDNDKERFIRENQFVKIDTIAADESFTQVDIGDRIMKLNTEIRDVGPLSKKGFYLAFQDVGACIALVSVRVFYKKCPLTVRNLAQFPDTITGADTSSLVEVRGSCVNNSEEKDVPKMYCGADGEWLVPIGNCLCNAGHEERSGECQACKIGYYKALSTDATCAKCPPHSYSVWEGATSCTCDRGFFRADNDAASMPCTRPPSAPLNLISNVNETSVNLEWSSPQNTGGRQDISYNVVCKKCGAGDPSKCRPCGSGVHYTPQQNGLKTTKVSITDLLAHTNYTFEIWAVNGVSKYNPNPDQSVSVTVTTNQAAPSSIALVQAKEVTRYSVALAWLEPDRPNGVILEYEVKYYEKDQNERSYRIVRTAARNTDIKGLNPLTSYVFHVRARTAAGYGDFSEPLEVTTNTVPSRIIGD 542
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536      


Chain F from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains d4m4rf_ F: automated matches                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee....hhhhh....eeee....eeeee...............eeeeeehhhhhhh......eeeeee...........eeeee................eeeeeeeee..........eeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4m4r F  28 VADRYAVYWNSSNPRFQRGDYHIDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFEFRPGREYFYISSAIPDNGRRSCLKLKVFVRPTNSCM 165
                                    37        47        57        67        77        87        97       107       117       127       137       147       157        


Chain G from PDB  Type:PROTEIN  Length:516
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee..........eee......eeeeeee...eeeeeeee.........eeee...ee......eeeeeeeee.hhhhh.........eeeeeeeee.............eeeeeee.....hhhhhh......eeeeeee......eeeeeeee....eeeeeeeeeeeee..eee..eee..ee.......eeeee.ee...eeeeeeeeeeee........eeeeee...eeee..eeee....ee.........ee........................................eeeee........eeee...........eeeee..ee...............eee.........eeeee......eeeeeeeee........hhh.eeeeeee...........eeeeee....eeeee...........eeeeeeee........eeeee...eeee.......eeeeeeeeee..ee......eeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4m4r G  27 PANEVTLLDSRSVQGELGWIASPLEGGWEEVSIMDEKNTPIRTYQVCNVMEPSQNNWLRTDWITREGAQRVYIEIKFTLRDCNSLPGVMGTCKETFNLYYYESDNDKERFIRENQFVKIDTIAADESFTQVDIGDRIMKLNTEIRDVGPLSKKGFYLAFQDVGACIALVSVRVFYKKCPLTVRNLAQFPDTITGADTSSLVEVRGSCVNNSEEKDVPKMYCGADGEWLVPIGNCLCNAGHEERSGECQACKIGYYKALSTDATCAKCPPHSYSVWEGATSCTCDRGFFRADNDAASMPCTRPPSAPLNLISNVNETSVNLEWSSPQNTGGRQDISYNVVCKKCGAGDPSKCRPCGSGVHYTPQQNGLKTTKVSITDLLAHTNYTFEIWAVNGVSKYNPNPDQSVSVTVTTNQAAPSSIALVQAKEVTRYSVALAWLEPDRPNGVILEYEVKYYEKDQNERSYRIVRTAARNTDIKGLNPLTSYVFHVRARTAAGYGDFSEPLEVTTNTVPSRIIGD 542
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536      


Chain H from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains d4m4rh_ H: automated matches                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee.............eeee....eeeee...............eeeeeehhhhhhhh.....eeeeee...........eeeee.................eeeeeeee..........eeeeee.hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4m4r H  28 VADRYAVYWNSSNPRFQRGDYHIDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFEFRPGREYFYISSAIPDNGRRSCLKLKVFVRPTNSCM 165
                                    37        47        57        67        77        87        97       107       117       127       137       147       157
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M4R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M4R)

(-) Gene Ontology  (92, 100)

Asymmetric Unit(hide GO term definitions)

 Visualization

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Asymmetric Unit
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  Cis Peptide Bonds
    Asn A:235 - Asn A:236   [ RasMol ]  
    Asn C:235 - Asn C:236   [ RasMol ]  
    Asn E:235 - Asn E:236   [ RasMol ]  
    Asn G:235 - Asn G:236   [ RasMol ]  
    Gly A:174 - Pro A:175   [ RasMol ]  
    Gly A:355 - Gly A:356   [ RasMol ]  
    Gly C:174 - Pro C:175   [ RasMol ]  
    Gly C:355 - Gly C:356   [ RasMol ]  
    Gly E:174 - Pro E:175   [ RasMol ]  
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  EPHA4_HUMAN | P54764
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EFNA5_HUMAN | P52803: 2x11 3mx0 4bk5 4bka 4l0p
        EPHA4_HUMAN | P54764: 2lw8 2wo1 2wo2 2wo3 3ckh 3gxu 4bk4 4bk5 4bka 4bkf 4m4p 4w4z 4w50 5jr2

(-) Related Entries Specified in the PDB File

4m4p