4LYX - JenaLib

Title :   FIVE MINUTES IRON LOADED FROG M FERRITIN

Authors :   S. Mangani, F. Di Pisa, C. Pozzi, P. Turano, D. Lalli

Date :   31 Jul 13 (Deposition) - 06 Aug 14 (Release) - 15 Apr 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.23

Chains :   Asym. Unit : A
Biol. Unit 1: A  (24x)

Keywords :   Oxidoreductase, Ferroxidase, (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Pozzi, F. Di Pisa, D. Lalli, C. Rosa, E. Theil, P. Turano, S. Mangani
Time-Lapse Anomalous X-Ray Diffraction Shows How Fe(2+) Substrate Ions Move Through Ferritin Protein Nanocages To Oxidoreductase Sites.
Acta Crystallogr. , Sect. D V. 71 941 2015
PubMed-ID: 25849404 | Reference-DOI: 10.1107/S1399004715002333

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 26)

Sites (26, 26)

Asymmetric Unit (26, 26)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLU A:23 , GLU A:58 , HIS A:61 , FE2 A:202 , MG A:211 , HOH A:301 , HOH A:481	BINDING SITE FOR RESIDUE FE2 A 201
02	AC2	SOFTWARE	GLU A:58 , GLU A:103 , FE2 A:201 , MG A:211 , HOH A:301 , HOH A:441 , HOH A:497 , HOH A:664	BINDING SITE FOR RESIDUE FE2 A 202
03	AC3	SOFTWARE	HIS A:169 , CL A:219 , CL A:220	BINDING SITE FOR RESIDUE FE2 A 203
04	AC4	SOFTWARE	HOH A:412 , HOH A:472 , HOH A:498 , HOH A:516 , HOH A:536 , HOH A:566	BINDING SITE FOR RESIDUE MG A 204
05	AC5	SOFTWARE	SER A:10 , HOH A:325 , HOH A:387 , HOH A:446 , HOH A:458 , HOH A:503	BINDING SITE FOR RESIDUE MG A 205
06	AC6	SOFTWARE	HOH A:344 , HOH A:393 , HOH A:512 , HOH A:527 , HOH A:529 , HOH A:558	BINDING SITE FOR RESIDUE MG A 206
07	AC7	SOFTWARE	GLU A:57 , GLU A:136 , ASP A:140 , HOH A:403 , HOH A:434 , HOH A:537	BINDING SITE FOR RESIDUE MG A 207
08	AC8	SOFTWARE	ASP A:127 , HOH A:545 , HOH A:661	BINDING SITE FOR RESIDUE MG A 208
09	AC9	SOFTWARE	HOH A:439 , HOH A:483 , HOH A:521 , HOH A:524 , HOH A:650 , HOH A:658	BINDING SITE FOR RESIDUE MG A 209
10	BC1	SOFTWARE	HIS A:45 , HOH A:425 , HOH A:501 , HOH A:538 , HOH A:625 , HOH A:629 , HOH A:660	BINDING SITE FOR RESIDUE MG A 210
11	BC2	SOFTWARE	HIS A:61 , GLU A:136 , GLN A:137 , FE2 A:201 , FE2 A:202 , HOH A:301 , HOH A:481 , HOH A:497 , HOH A:664	BINDING SITE FOR RESIDUE MG A 211
12	BC3	SOFTWARE	HOH A:324 , HOH A:400	BINDING SITE FOR RESIDUE MG A 212
13	BC4	SOFTWARE	HOH A:382 , HOH A:396 , HOH A:424 , HOH A:433	BINDING SITE FOR RESIDUE MG A 213
14	BC5	SOFTWARE	HOH A:414 , HOH A:508	BINDING SITE FOR RESIDUE MG A 214
15	BC6	SOFTWARE	ASN A:150 , SER A:170 , HOH A:367 , HOH A:589	BINDING SITE FOR RESIDUE CL A 215
16	BC7	SOFTWARE	ASN A:91 , GLU A:94 , PRO A:157 , HOH A:580 , HOH A:644	BINDING SITE FOR RESIDUE CL A 216
17	BC8	SOFTWARE	ARG A:5 , ASN A:7 , TYR A:8 , HOH A:584	BINDING SITE FOR RESIDUE CL A 217
18	BC9	SOFTWARE	ASP A:87 , GLU A:88 , HOH A:556	BINDING SITE FOR RESIDUE CL A 218
19	CC1	SOFTWARE	HIS A:169 , FE2 A:203	BINDING SITE FOR RESIDUE CL A 219
20	CC2	SOFTWARE	HIS A:169 , FE2 A:203	BINDING SITE FOR RESIDUE CL A 220
21	CC3	SOFTWARE	SER A:131 , GLU A:132 , TYR A:133 , GLU A:135 , GLU A:136 , HOH A:549	BINDING SITE FOR RESIDUE CL A 221
22	CC4	SOFTWARE	ASN A:17 , HOH A:398	BINDING SITE FOR RESIDUE CL A 222
23	CC5	SOFTWARE	LYS A:82 , HOH A:302 , HOH A:341	BINDING SITE FOR RESIDUE CL A 223
24	CC6	SOFTWARE	GLN A:101 , LEU A:102 , THR A:105 , HOH A:523	BINDING SITE FOR RESIDUE CL A 224
25	CC7	SOFTWARE	ASN A:7 , GLN A:108 , HOH A:376 , HOH A:389 , HOH A:667	BINDING SITE FOR RESIDUE CL A 225
26	CC8	SOFTWARE	SER A:10 , HOH A:613 , HOH A:653	BINDING SITE FOR RESIDUE CL A 226

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

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Chain A from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lyx A   1 VSQVRQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHAEKFMKYQNKRGGRVVLQDIKKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPHLCDFLESEYLEEQVKDIKRIGDFITNLKRLGLPENGMGEYLFDKHSVKES 174
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

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