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(-) Description

Title :  IRON-FREE STATE OF RANA CATESBEIANA H' FERRITIN VARIANT E57A/E136A/D140A
 
Authors :  C. Pozzi, F. Di Pisa, S. Mangani, C. Bernacchioni, P. Turano
Date :  08 Apr 16  (Deposition) - 05 Oct 16  (Release) - 02 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (24x)
Keywords :  Rana Catesbeiana, Ferritin Variant, Ferroxidase Activity, M Type, H' Type, Oxidoreductase Activity, Iron, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Bernacchioni, C. Pozzi, F. Di Pisa, S. Mangani, P. Turano
Ferroxidase Activity In Eukaryotic Ferritin Is Controlled B Accessory-Iron-Binding Sites In The Catalytic Cavity.
Chemistry V. 22 16213 2016
PubMed-ID: 27650996  |  Reference-DOI: 10.1002/CHEM.201602842

(-) Compounds

Molecule 1 - FERRITIN, MIDDLE SUBUNIT
    Chains: A
    EC Number: 1.16.3.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: PLYSS
    Expression System Vector: PET3A
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Common: AMERICAN BULLFROG
    Organism Scientific: LITHOBATES CATESBEIANA
    Organism Taxid: 8400
    Synonym: FERRITIN M,FERRITIN H',FERRITIN X

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (24x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 22)

Asymmetric Unit (2, 22)
No.NameCountTypeFull Name
1CL14Ligand/IonCHLORIDE ION
2MG8Ligand/IonMAGNESIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:23 , GLU A:58 , HIS A:61 , HOH A:340 , HOH A:342binding site for residue MG A 201
02AC2SOFTWAREHOH A:313 , HOH A:319 , HOH A:558 , HOH A:612binding site for residue MG A 202
03AC3SOFTWAREHOH A:434 , HOH A:553 , HOH A:562 , HOH A:583 , HOH A:634 , HOH A:643binding site for residue MG A 203
04AC4SOFTWAREHOH A:309 , HOH A:375 , HOH A:514 , HOH A:538 , HOH A:610 , HOH A:626binding site for residue MG A 204
05AC5SOFTWAREHOH A:388 , HOH A:427 , HOH A:430 , HOH A:483 , HOH A:599 , HOH A:636binding site for residue MG A 205
06AC6SOFTWARESER A:10 , HOH A:345 , HOH A:421 , HOH A:469 , HOH A:481 , HOH A:604binding site for residue MG A 206
07AC7SOFTWAREHOH A:335 , HOH A:522binding site for residue MG A 207
08AC8SOFTWAREASP A:127 , HOH A:304 , HOH A:305binding site for residue MG A 208
09AC9SOFTWAREHIS A:169binding site for residue CL A 209
10AD1SOFTWAREASP A:87 , HOH A:315 , HOH A:640binding site for residue CL A 210
11AD2SOFTWAREGLN A:101 , LEU A:102 , THR A:105 , HOH A:598binding site for residue CL A 211
12AD3SOFTWAREASN A:17 , HOH A:529binding site for residue CL A 212
13AD4SOFTWAREARG A:5 , ASN A:7 , TYR A:8binding site for residue CL A 213
14AD5SOFTWAREHIS A:169binding site for residue CL A 214
15AD6SOFTWARESER A:10 , HOH A:555 , HOH A:580 , HOH A:596binding site for residue CL A 215
16AD7SOFTWAREASN A:7 , GLN A:108 , LYS A:115 , HOH A:320 , HOH A:453binding site for residue CL A 216
17AD8SOFTWARESER A:131 , GLU A:132 , TYR A:133 , GLU A:135 , ALA A:136 , HOH A:582binding site for residue CL A 217
18AD9SOFTWARELYS A:64 , HOH A:576binding site for residue CL A 218
19AE1SOFTWAREHOH A:480 , HOH A:639binding site for residue CL A 219
20AE2SOFTWAREVAL A:1 , SER A:2 , ARG A:5 , GLY A:73 , HOH A:355 , HOH A:581binding site for residue CL A 220
21AE3SOFTWARELYS A:82 , HOH A:371 , HOH A:463binding site for residue CL A 221
22AE4SOFTWAREASN A:150 , LYS A:168 , SER A:170 , HOH A:416binding site for residue CL A 222

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5J8S)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu A:156 -Pro A:157

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5J8S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5J8S)

(-) Exons   (0, 0)

(no "Exon" information available for 5J8S)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5j8s A   1 VSQVRQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHAEREHAEKFMKYQNKRGGRVVLQDIKKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPHLCDFLESEYLEAQVKAIKRIGDFITNLKRLGLPENGMGEYLFDKHSVKES 174
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5J8S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5J8S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5J8S)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FRI2_LITCT | P07798: 1mfr 3ka3 3ka4 3ka6 3ka8 3ka9 3rbc 3re7 3rgd 3se1 3sh6 3shx 4das 4lpj 4lpm 4lpn 4lqh 4lqj 4lqn 4lqv 4lyu 4lyx 4mjy 4mku 4ml5 4mn9 4my7 4p18 5j8w 5j93 5j9v 5jac

(-) Related Entries Specified in the PDB File

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