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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE P132A, Y133G MUTANT OF PYROCOCCUS FURIOSUS PHOSPHOGLUCOSE ISOMERASE IN COMPLEX WITH MANGANESE AND 5-PHOSPHO-D-ARABINONATE.
 
Authors :  P. J. Baker, F. M. Almourfi
Date :  25 Jul 13  (Deposition) - 30 Jul 14  (Release) - 30 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.41
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Cupin Fold, Isomerase, Glucose 6-Phsphate And Fructose 6-Phosphate Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Baker, F. M. Almourfi, J. Raedts, H-J. Joosten, S. Hendriks, S. W. M. Kengen, W. R. Hage, P. J. Schaap, S. E. Sedelnikova, J. Van Der Oost
Correlated Mutation Analysis As A Tool For Smart Library Design To Improve Protein Performance.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUCOSE-6-PHOSPHATE ISOMERASE
    Chains: A
    EC Number: 5.3.1.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24D
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PGIA, PF0196
    Mutation: YES
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 186497
    Strain: ATCC 43587 / DSM 3638 / JCM 8422 / VC1
    Synonym: GPI, PHOSPHOGLUCOSE ISOMERASE, PGI, PHOSPHOHEXOSE ISOMERASE, PHI

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2MN1Ligand/IonMANGANESE (II) ION
3PA51Ligand/Ion5-PHOSPHOARABINONIC ACID
Biological Unit 1 (2, 10)
No.NameCountTypeFull Name
1EDO8Ligand/Ion1,2-ETHANEDIOL
2MN-1Ligand/IonMANGANESE (II) ION
3PA52Ligand/Ion5-PHOSPHOARABINONIC ACID

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:88 , HIS A:90 , GLU A:97 , HIS A:136 , PA5 A:202 , HOH A:492BINDING SITE FOR RESIDUE MN A 201
2AC2SOFTWARETYR A:52 , THR A:71 , THR A:85 , GLY A:87 , HIS A:88 , GLU A:97 , TYR A:99 , HIS A:136 , PHE A:148 , TYR A:152 , TYR A:160 , MN A:201 , EDO A:203 , HOH A:307 , HOH A:318 , HOH A:320 , HOH A:453 , HOH A:492BINDING SITE FOR RESIDUE PA5 A 202
3AC3SOFTWARELYS A:46 , GLU A:58 , TYR A:152 , HIS A:158 , PA5 A:202 , HOH A:331BINDING SITE FOR RESIDUE EDO A 203
4AC4SOFTWAREGLY A:64 , ASP A:65 , LEU A:66 , PRO A:153 , HOH A:351 , HOH A:495BINDING SITE FOR RESIDUE EDO A 204
5AC5SOFTWAREARG A:25 , GLU A:47 , LYS A:86 , HOH A:453 , HOH A:476BINDING SITE FOR RESIDUE EDO A 205
6AC6SOFTWAREPRO A:75 , PRO A:145 , HOH A:430 , HOH A:481BINDING SITE FOR RESIDUE EDO A 206

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LUK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LUK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LUK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LUK)

(-) Exons   (0, 0)

(no "Exon" information available for 4LUK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeee.hhhh....hhhhhhhhhhhh..eeeeeeee........eeeeeeee...ee..ee..............eeeeeee..eeeeee.....eeeeee....eeee....eeeeee.....eeeeeeee......hhhhhhhh..eeeeee..eeeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4luk A   1 MYKEPFGVKVDFETGIIEGAKKSVRRLSDMEGYFVDERAWKELVEKEDPVVYEVYAVEQEEKEGDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPAGWAHRTVNIGDEPFIFLAIYPADAGHDYGTIAEKGFSKIVIEENGEVKVVDNPRWKK 189
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LUK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LUK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LUK)

(-) Gene Ontology  (7, 7)

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  4luk
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  G6PI_PYRFU | P83194
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        G6PI_PYRFU | P83194: 1qxj 1qxr 1qy4 1x7n 1x82 1x8e 2gc0 2gc1 2gc2 2gc3 3sxw 4lta 4lul 4lum

(-) Related Entries Specified in the PDB File

4lta 4lul 4lum