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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE P132R, Y133G MUTANT OF PYROCOCCUS FURIOSUS PHOSPHOGLUCOSE ISOMERASE IN COMPLEX WITH MANGANESE AND 5-PHOSPHO-D-ARABINONATE.
 
Authors :  P. J. Baker, F. M. Almourfi
Date :  23 Jul 13  (Deposition) - 30 Jul 14  (Release) - 30 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.04
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cupin Fold, Isomerase, Glucose 6-Phosphate And Fructose 6-Phosphate Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Baker, F. M. Almourfi, J. Raedts, H-J. Joosten, S. Hendriks, S. W. M. Kengen, W. R. Hage, P. J. Schaap, S. E. Sedelnikova, J. Van Der Oost
Correlated Mutation Analysis As A Tool For Smart Library Design To Improve Protein Performance.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUCOSE-6-PHOSPHATE ISOMERASE
    Chains: A, B
    EC Number: 5.3.1.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24D
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PGIA, PF0196
    Mutation: YES
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 186497
    Strain: ATCC 43587 / DSM 3638 / JCM 8422 / VC1
    Synonym: GPI, PHOSPHOGLUCOSE ISOMERASE, PGI, PHOSPHOHEXOSE ISOMERASE, PHI

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2MN2Ligand/IonMANGANESE (II) ION
3PA52Ligand/Ion5-PHOSPHOARABINONIC ACID

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:88 , HIS A:90 , GLU A:97 , HIS A:136 , PA5 A:202 , HOH A:357BINDING SITE FOR RESIDUE MN A 201
2AC2SOFTWARETYR A:52 , THR A:71 , THR A:85 , GLY A:87 , HIS A:88 , GLU A:97 , TYR A:99 , HIS A:136 , PHE A:148 , TYR A:160 , MN A:201 , EDO A:203 , HOH A:355 , HOH A:356 , HOH A:357 , HOH A:358BINDING SITE FOR RESIDUE PA5 A 202
3AC3SOFTWARETYR A:152 , HIS A:158 , PA5 A:202BINDING SITE FOR RESIDUE EDO A 203
4AC4SOFTWARESER A:23 , VAL A:24 , ARG A:25 , GLU B:18BINDING SITE FOR RESIDUE EDO A 204
5AC5SOFTWAREHIS B:88 , HIS B:90 , GLU B:97 , HIS B:136 , PA5 B:202 , HOH B:380BINDING SITE FOR RESIDUE MN B 201
6AC6SOFTWARETYR B:52 , THR B:71 , THR B:85 , GLY B:87 , HIS B:88 , GLU B:97 , TYR B:99 , HIS B:136 , PHE B:148 , ALA B:150 , TYR B:152 , TYR B:160 , MN B:201 , EDO B:204 , HOH B:316 , HOH B:319 , HOH B:376 , HOH B:380 , HOH B:381BINDING SITE FOR RESIDUE PA5 B 202
7AC7SOFTWAREARG B:25 , LYS B:86 , TYR B:160 , EDO B:204BINDING SITE FOR RESIDUE EDO B 203
8AC8SOFTWARETYR B:160 , PA5 B:202 , EDO B:203BINDING SITE FOR RESIDUE EDO B 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LTA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LTA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LTA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LTA)

(-) Exons   (0, 0)

(no "Exon" information available for 4LTA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee...........eeeeee.hhhh....hhhhhhhhhhhh..eeeeeeee........eeeeeeee...ee..ee..............eeeeeee..eeeeee.....eeeeee...eeeee....eeeeee.....eeeeeeee......hhhhhhhh..eeeeee..eeeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lta A   1 MYKEPFGVKVDFETGIIEGAKKSVRRLSDMEGYFVDERAWKELVEKEDPVVYEVYAVEQEEKEGDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPRGWAHRTVNIGDEPFIFLAIYPADAGHDYGTIAEKGFSKIVIEENGEVKVVDNPRWKK 189
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180         


Chain B from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee...........eeeeee.hhhh....hhhhhhhhhhhh..eeeeeeee........eeeeeeee...ee..ee..............eeeeeee..eeeeee.....eeeeee...eeeee....eeeeee.....eeeeeeee......hhhhhhhh..eeeeee..eeeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lta B   1 MYKEPFGVKVDFETGIIEGAKKSVRRLSDMEGYFVDERAWKELVEKEDPVVYEVYAVEQEEKEGDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPRGWAHRTVNIGDEPFIFLAIYPADAGHDYGTIAEKGFSKIVIEENGEVKVVDNPRWKK 189
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LTA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LTA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LTA)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  4lta
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  G6PI_PYRFU | P83194
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        G6PI_PYRFU | P83194: 1qxj 1qxr 1qy4 1x7n 1x82 1x8e 2gc0 2gc1 2gc2 2gc3 3sxw 4luk 4lul 4lum

(-) Related Entries Specified in the PDB File

4luk 4lul 4lum