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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE P132V MUTANT OF PYROCOCCUS FURIOSUS PHOSPHOGLUCOSE ISOMERASE IN COMPLEX WITH MANGANESE AND FRUCTOSE-6-PHOSPHATE.
 
Authors :  P. J. Baker, F. M. Almourfi
Date :  25 Jul 13  (Deposition) - 30 Jul 14  (Release) - 30 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.79
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cupin Fold, Isomerase, Glucose 6-Phosphate And Fructose 6-Phosphate Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Baker, F. M. Almourfi, J. Raedts, H-J. Joosten, S. Hendriks, S. W. M. Kengen, W. R. Hage, P. J. Schaap, S. E. Sedelnikova, J. Van Der Oost
Correlated Mutation Analysis As A Tool For Smart Library Design To Improve Protein Performance.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUCOSE-6-PHOSPHATE ISOMERASE
    Chains: A, B
    EC Number: 5.3.1.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24D
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PGIA, PF0196
    Mutation: YES
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 186497
    Strain: ATCC 43587 / DSM 3638 / JCM 8422 / VC1
    Synonym: GPI, PHOSPHOGLUCOSE ISOMERASE, PGI, PHOSPHOHEXOSE ISOMERASE, PHI

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1F6R2Ligand/IonFRUCTOSE -6-PHOSPHATE
2MN2Ligand/IonMANGANESE (II) ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:88 , HIS A:90 , GLU A:97 , HIS A:136 , F6R A:202BINDING SITE FOR RESIDUE MN A 201
2AC2SOFTWARETYR A:52 , THR A:71 , THR A:85 , GLY A:87 , HIS A:88 , HIS A:90 , GLU A:97 , TYR A:99 , HIS A:136 , PHE A:148 , TYR A:152 , HIS A:158 , TYR A:160 , MN A:201 , HOH A:314 , HOH A:317 , HOH A:335 , HOH A:414BINDING SITE FOR RESIDUE F6R A 202
3AC3SOFTWAREHIS B:88 , HIS B:90 , GLU B:97 , HIS B:136 , F6R B:202BINDING SITE FOR RESIDUE MN B 201
4AC4SOFTWARETYR B:52 , THR B:71 , THR B:85 , GLY B:87 , HIS B:88 , HIS B:90 , GLU B:97 , TYR B:99 , HIS B:136 , PHE B:148 , TYR B:152 , HIS B:158 , TYR B:160 , MN B:201 , HOH B:308 , HOH B:309 , HOH B:339 , HOH B:367BINDING SITE FOR RESIDUE F6R B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LUM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LUM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LUM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LUM)

(-) Exons   (0, 0)

(no "Exon" information available for 4LUM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee...........eeeeee.hhhh....hhhhhhhhhhhh..eeeeeeee........eeeeeeee...ee..ee..............eeeeeee..eeeeee.....eeeeee...eeeee....eeeeee.....eeeeeeee......hhhhhhhh..eeeeee..eeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lum A   0 MMYKEPFGVKVDFETGIIEGAKKSVRRLSDMEGYFVDERAWKELVEKEDPVVYEVYAVEQEEKEGDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPVYWAHRTVNIGDEPFIFLAIYPADAGHDYGTIAEKGFSKIVIEENGEVKVVDNPRWKK 189
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189


Chain B from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee...........eeeeee.hhhh....hhhhhhhhhhhh..eeeeeeee........eeeeeeee...ee..ee..............eeeeeee..eeeeee.....eeeeee...eeeee....eeeeee.....eeeeeeee......hhhhhhhh..eeeeee..eeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lum B   0 MMYKEPFGVKVDFETGIIEGAKKSVRRLSDMEGYFVDERAWKELVEKEDPVVYEVYAVEQEEKEGDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPVYWAHRTVNIGDEPFIFLAIYPADAGHDYGTIAEKGFSKIVIEENGEVKVVDNPRWKK 189
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LUM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LUM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LUM)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  G6PI_PYRFU | P83194
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        G6PI_PYRFU | P83194: 1qxj 1qxr 1qy4 1x7n 1x82 1x8e 2gc0 2gc1 2gc2 2gc3 3sxw 4lta 4luk 4lul

(-) Related Entries Specified in the PDB File

4lta 4luk 4lul