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(-) Description

Title :  C1S CUB1-EGF-CUB2
 
Authors :  R. Wallis, U. Venkatraman Girija, P. C. E Moody, J. E Marshall
Date :  10 Jul 13  (Deposition) - 07 Aug 13  (Release) - 23 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.92
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  A (1x),D (1x)
Biol. Unit 6:  B,C  (1x)
Keywords :  Cub Domain, Egf-Like Domain, Complement C1S, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  U. Venkatraman Girija, A. R. Gingras, J. E. Marshall, R. Panchal, M. A. Sheikh, P. Gal, W. J. Schwaeble, D. A. Mitchell, P. C. Moody, R. Wallis
Structural Basis Of The C1Q/C1S Interaction And Its Central Role In Assembly Of The C1 Complex Of Complement Activation
Proc. Natl. Acad. Sci. Usa V. 110 13916 2013
PubMed-ID: 23922389  |  Reference-DOI: 10.1073/PNAS.1311113110

(-) Compounds

Molecule 1 - COMPLEMENT C1S SUBCOMPONENT HEAVY CHAIN
    ChainsA, B, C, D
    EC Number3.4.21.42
    EngineeredYES
    Expression SystemCRICETULUS GRISEUS
    Expression System Taxid10026
    FragmentCUB1-EGF-CUB2 FRAGMENT (UNP RESIDUES 17-292)
    GeneC1S
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymC1 ESTERASE, COMPLEMENT COMPONENT 1 SUBCOMPONENT S

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A   
Biological Unit 2 (1x) B  
Biological Unit 3 (1x)  C 
Biological Unit 4 (1x)   D
Biological Unit 5 (1x)A (1x)  D (1x)
Biological Unit 6 (1x) BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 16)

Asymmetric Unit (2, 16)
No.NameCountTypeFull Name
1CA12Ligand/IonCALCIUM ION
2NA4Ligand/IonSODIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2NA-1Ligand/IonSODIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2NA-1Ligand/IonSODIUM ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2NA-1Ligand/IonSODIUM ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2NA-1Ligand/IonSODIUM ION
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2NA-1Ligand/IonSODIUM ION
Biological Unit 6 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2NA-1Ligand/IonSODIUM ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:10 , PRO A:11 , TYR A:13 , GLN A:15 , TYR A:17 , THR A:106 , GLY A:107BINDING SITE FOR RESIDUE NA A 301
02AC2SOFTWAREGLU A:45 , ASP A:53 , ASP A:98 , SER A:100 , ASN A:101BINDING SITE FOR RESIDUE CA A 302
03AC3SOFTWAREASP A:116 , ILE A:117 , GLU A:119 , ASN A:134 , PHE A:135 , GLY A:138BINDING SITE FOR RESIDUE CA A 303
04AC4SOFTWAREGLU A:211 , ASP A:221 , ASP A:260 , THR A:262 , GLY A:263 , GLN A:264BINDING SITE FOR RESIDUE CA A 304
05AC5SOFTWARESER B:174 , PRO B:175 , LYS B:179 , TYR B:181 , LYS B:266 , GLY B:267BINDING SITE FOR RESIDUE NA B 301
06AC6SOFTWAREGLU B:45 , ASP B:53 , ASP B:98 , SER B:100 , ASN B:101BINDING SITE FOR RESIDUE CA B 302
07AC7SOFTWAREASP B:116 , ILE B:117 , GLU B:119 , ASN B:134 , PHE B:135 , GLY B:138BINDING SITE FOR RESIDUE CA B 303
08AC8SOFTWAREGLU B:211 , ASP B:221 , ASP B:260 , THR B:262 , GLY B:263 , GLN B:264BINDING SITE FOR RESIDUE CA B 304
09AC9SOFTWARESER C:174 , PRO C:175 , TYR C:177 , LYS C:179 , TYR C:181 , LYS C:266BINDING SITE FOR RESIDUE NA C 301
10BC1SOFTWAREASP C:53 , ASP C:98 , SER C:100 , ASN C:101BINDING SITE FOR RESIDUE CA C 302
11BC2SOFTWAREASP C:116 , ILE C:117 , GLU C:119 , ASN C:134 , PHE C:135 , GLY C:138BINDING SITE FOR RESIDUE CA C 303
12BC3SOFTWAREGLU C:211 , ASP C:221 , ASP C:260 , THR C:262 , GLY C:263 , GLN C:264BINDING SITE FOR RESIDUE CA C 304
13BC4SOFTWARESER D:10 , PRO D:11 , ASN D:12 , TYR D:13 , GLN D:15 , TYR D:17 , THR D:106BINDING SITE FOR RESIDUE NA D 301
14BC5SOFTWAREGLU D:45 , ASP D:53 , ASP D:98 , SER D:100 , ASN D:101BINDING SITE FOR RESIDUE CA D 302
15BC6SOFTWAREASP D:116 , ILE D:117 , GLU D:119 , ASN D:134 , PHE D:135 , GLY D:138BINDING SITE FOR RESIDUE CA D 303
16BC7SOFTWAREGLU D:211 , ASP D:221 , ASP D:260 , THR D:262 , GLY D:263 , GLN D:264BINDING SITE FOR RESIDUE CA D 304

(-) SS Bonds  (24, 24)

Asymmetric Unit
No.Residues
1A:50 -A:68
2A:120 -A:132
3A:128 -A:141
4A:143 -A:156
5A:160 -A:187
6A:219 -A:236
7B:50 -B:68
8B:120 -B:132
9B:128 -B:141
10B:143 -B:156
11B:160 -B:187
12B:219 -B:236
13C:50 -C:68
14C:120 -C:132
15C:128 -C:141
16C:143 -C:156
17C:160 -C:187
18C:219 -C:236
19D:50 -D:68
20D:120 -D:132
21D:128 -D:141
22D:143 -D:156
23D:160 -D:187
24D:219 -D:236

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Tyr A:13 -Pro A:14
2Tyr A:177 -Pro A:178
3Gly A:233 -Pro A:234
4Tyr B:13 -Pro B:14
5Tyr B:177 -Pro B:178
6Gly B:233 -Pro B:234
7Tyr C:13 -Pro C:14
8Tyr C:177 -Pro C:178
9Gly C:233 -Pro C:234
10Tyr D:13 -Pro D:14
11Tyr D:177 -Pro D:178
12Gly D:233 -Pro D:234

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LMF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LMF)

(-) Exons   (0, 0)

(no "Exon" information available for 4LMF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:276
                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4lmfa1 A:2-116 Complement C1S component                                                                           d4lmfa2 A:117-159 Complement C1S component d4lmfa3 A:160-277 Complement C1S component                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee...........eeeeeeee....eeeeeeeeeeee..hhhhh..eeeeee..eeeeee.eee..........eeeee...eeeeeeee.........eeeeeeeeee..............eeeee..eeeee....eee......eee..eeeee...eeeee............eeeeeee....eeeeee.hhh.ee............eeeeee..eeeeee.........eee....eeeeeee........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lmf A   2 PTMYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISGDTEEGRLCGQRSSNNPHSPIVEEFQVPYNKLQVIFKSDFSNEERFTGFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGVNCSGDVFTALIGEIASPNYPKPYPENSRCEYQIRLEKGFQVVVTLRREDFDVEAADSAGNCLDSLVFVAGDRQFGPYCGHGFPGPLNIETKSNALDIIFQTDLTGQKKGWKLRYHGDPM 277
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271      

Chain B from PDB  Type:PROTEIN  Length:276
                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4lmfb1 B:2-116 Complement C1S component                                                                           d4lmfb2 B:117-159 Complement C1S component d4lmfb3 B:160-277 Complement C1S component                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee............eeeeeee....eeeeeeeeeeee..hhhhh..eeeeee..eeeeee.eee..........eeeee...eeeeeee..........eeeeeeeeee..............eeeee..eeeee....eee......eee..eeeee...eeeee............eeeeeee....eeeeee.hhh.ee............eeeeee..eeeeee.........eee....eeeeeee........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lmf B   2 PTMYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISGDTEEGRLCGQRSSNNPHSPIVEEFQVPYNKLQVIFKSDFSNEERFTGFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGVNCSGDVFTALIGEIASPNYPKPYPENSRCEYQIRLEKGFQVVVTLRREDFDVEAADSAGNCLDSLVFVAGDRQFGPYCGHGFPGPLNIETKSNALDIIFQTDLTGQKKGWKLRYHGDPM 277
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271      

Chain C from PDB  Type:PROTEIN  Length:276
                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4lmfc1 C:2-116 Complement C1S component                                                                           d4lmfc2 C:117-159 Complement C1S component d4lmfc3 C:160-277 Complement C1S component                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee...........eeeeeeee....eeeeeeeeeee...hhhhh..eeeeee..eeeeee..............eeeee...eeeeeeee.........eeeeeeeeee..............eeeee..eeeee.....ee......ee...eeeee...eeeee............eeeeeee....eeeeee.hhh.ee............eeeeee..eeeeee.........eee....eeeeeee........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lmf C   2 PTMYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISGDTEEGRLCGQRSSNNPHSPIVEEFQVPYNKLQVIFKSDFSNEERFTGFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGVNCSGDVFTALIGEIASPNYPKPYPENSRCEYQIRLEKGFQVVVTLRREDFDVEAADSAGNCLDSLVFVAGDRQFGPYCGHGFPGPLNIETKSNALDIIFQTDLTGQKKGWKLRYHGDPM 277
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271      

Chain D from PDB  Type:PROTEIN  Length:276
                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4lmfd1 D:2-116 Complement C1S component                                                                           d4lmfd2 D:117-159 Complement C1S component d4lmfd3 D:160-277 Complement C1S component                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee...........eeeeeeee....eeeeeeeeeee...hhhhh..eeeeee..eeeeee..............eeeee...eeeeeeee.........eeeeeeeeee..............eeeee..eeeee....eee......eee..eeeee...eeeee............eeeeeee....eeeeee.hhh.ee............eeeeee..eeeeee.........eee....eeeeeee........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lmf D   2 PTMYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISGDTEEGRLCGQRSSNNPHSPIVEEFQVPYNKLQVIFKSDFSNEERFTGFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGVNCSGDVFTALIGEIASPNYPKPYPENSRCEYQIRLEKGFQVVVTLRREDFDVEAADSAGNCLDSLVFVAGDRQFGPYCGHGFPGPLNIETKSNALDIIFQTDLTGQKKGWKLRYHGDPM 277
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LMF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LMF)

(-) Gene Ontology  (16, 16)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        C1S_HUMAN | P098711elv 1nzi 4j1y 4lor 4los 4lot

(-) Related Entries Specified in the PDB File

4lor 4los 4lot