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(-) Description

Title :  C1S CUB2-CCP1-CCP2
 
Authors :  R. Wallis, U. Venkatraman Girija, P. C. E. Moody, J. E. Marshall
Date :  13 Jul 13  (Deposition) - 07 Aug 13  (Release) - 04 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.92
Chains :  Asym./Biol. Unit :  A
Keywords :  Cub Domain, Ccp Domain, Complement C1S, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  U. Venkatraman Girija, A. R. Gingras, J. E. Marshall, R. Panchal, M. A. Sheikh, P. Gal, W. J. Schwaeble, D. A. Mitchell, P. C. Moody, R. Wallis
Structural Basis Of The C1Q/C1S Interaction And Its Central Role In Assembly Of The C1 Complex Of Complement Activation
Proc. Natl. Acad. Sci. Usa V. 110 13916 2013
PubMed-ID: 23922389  |  Reference-DOI: 10.1073/PNAS.1311113110

(-) Compounds

Molecule 1 - COMPLEMENT C1S SUBCOMPONENT HEAVY CHAIN
    ChainsA
    EC Number3.4.21.42
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentCUB2-CCP1-CCP2 FRAGMENT (UNP RESIDUES 175-423)
    GeneC1S
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymC1 ESTERASE, COMPLEMENT COMPONENT 1 SUBCOMPONENT S

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4LOT)

(-) Sites  (0, 0)

(no "Site" information available for 4LOT)

(-) SS Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1A:160 -A:187
2A:219 -A:236
3A:279 -A:326
4A:306 -A:339
5A:344 -A:388
6A:371 -A:406

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Tyr A:177 -Pro A:178
2Gly A:233 -Pro A:234
3Glu A:290 -Pro A:291
4Glu A:373 -Pro A:374

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LOT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LOT)

(-) Exons   (0, 0)

(no "Exon" information available for 4LOT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....ee...eeeee............eeeeeee....eeeeeeeeeeee.............eeeeee..eeeeee.........eee....eeeeeee.........eeeeeeeee..........eeee..........eeeeee...eee.....eeeee.............eee...........eee..........eeeeee.............eeeee...eee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lot A 160 CSGDVFTALIGEIASPNYPKPYPENSRCEYQIRLEKGFQVVVTLRREDFDVEAADSAGNCLDSLVFVAGDRQFGPYCGHGFPGPLNIETKSNALDIIFQTDLTGQKKGWKLRYHGDPMPCPKEDTPNSVWEPAKAKYVFRDVVQITCLDGFEVVEGATSFYSTCQSNGKWSNSKLKCQPVDCGIPESIENGKVEDPESTLFGSVIRYTCEEPYYYMENGGGGEYHCAGNGSWVNEVLGPELPKCVP 408
                                   169       179       189       199       209       219       229       239       249       259       269       279       289       299       309     ||322       332       342       352       362       372       382       392       402      
                                                                                                                                                                                     315|                                                                                         
                                                                                                                                                                                      319                                                                                         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LOT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LOT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LOT)

(-) Gene Ontology  (16, 16)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Glu A:290 - Pro A:291   [ RasMol ]  
    Glu A:373 - Pro A:374   [ RasMol ]  
    Gly A:233 - Pro A:234   [ RasMol ]  
    Tyr A:177 - Pro A:178   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        C1S_HUMAN | P098711elv 1nzi 4j1y 4lmf 4lor 4los

(-) Related Entries Specified in the PDB File

4lmf 4lor 4los