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4LMF
Biol. Unit 5
Info
Asym.Unit (372 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (95 KB)
Biol.Unit 3 (96 KB)
Biol.Unit 4 (95 KB)
Biol.Unit 5 (184 KB)
Biol.Unit 6 (185 KB)
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(1)
Title
:
C1S CUB1-EGF-CUB2
Authors
:
R. Wallis, U. Venkatraman Girija, P. C. E Moody, J. E Marshall
Date
:
10 Jul 13 (Deposition) - 07 Aug 13 (Release) - 23 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.92
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,D (1x)
Biol. Unit 6: B,C (1x)
Keywords
:
Cub Domain, Egf-Like Domain, Complement C1S, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
U. Venkatraman Girija, A. R. Gingras, J. E. Marshall, R. Panchal, M. A. Sheikh, P. Gal, W. J. Schwaeble, D. A. Mitchell, P. C. Moody, R. Wallis
Structural Basis Of The C1Q/C1S Interaction And Its Central Role In Assembly Of The C1 Complex Of Complement Activation
Proc. Natl. Acad. Sci. Usa V. 110 13916 2013
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: BC4 (SOFTWARE)
6: BC5 (SOFTWARE)
7: BC6 (SOFTWARE)
8: BC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:10 , PRO A:11 , TYR A:13 , GLN A:15 , TYR A:17 , THR A:106 , GLY A:107
BINDING SITE FOR RESIDUE NA A 301
2
AC2
SOFTWARE
GLU A:45 , ASP A:53 , ASP A:98 , SER A:100 , ASN A:101
BINDING SITE FOR RESIDUE CA A 302
3
AC3
SOFTWARE
ASP A:116 , ILE A:117 , GLU A:119 , ASN A:134 , PHE A:135 , GLY A:138
BINDING SITE FOR RESIDUE CA A 303
4
AC4
SOFTWARE
GLU A:211 , ASP A:221 , ASP A:260 , THR A:262 , GLY A:263 , GLN A:264
BINDING SITE FOR RESIDUE CA A 304
5
BC4
SOFTWARE
SER D:10 , PRO D:11 , ASN D:12 , TYR D:13 , GLN D:15 , TYR D:17 , THR D:106
BINDING SITE FOR RESIDUE NA D 301
6
BC5
SOFTWARE
GLU D:45 , ASP D:53 , ASP D:98 , SER D:100 , ASN D:101
BINDING SITE FOR RESIDUE CA D 302
7
BC6
SOFTWARE
ASP D:116 , ILE D:117 , GLU D:119 , ASN D:134 , PHE D:135 , GLY D:138
BINDING SITE FOR RESIDUE CA D 303
8
BC7
SOFTWARE
GLU D:211 , ASP D:221 , ASP D:260 , THR D:262 , GLY D:263 , GLN D:264
BINDING SITE FOR RESIDUE CA D 304
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d4lmfa1 (A:2-116)
1b: SCOP_d4lmfd1 (D:2-116)
1c: SCOP_d4lmfd3 (D:160-277)
1d: SCOP_d4lmfa3 (A:160-277)
1e: SCOP_d4lmfb1 (B:2-116)
1f: SCOP_d4lmfb3 (B:160-277)
1g: SCOP_d4lmfc1 (C:2-116)
1h: SCOP_d4lmfc3 (C:160-277)
2a: SCOP_d4lmfa2 (A:117-159)
2b: SCOP_d4lmfb2 (B:117-159)
2c: SCOP_d4lmfc2 (C:117-159)
2d: SCOP_d4lmfd2 (D:117-159)
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Protein Domains
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(
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
CUB-like
(21)
Superfamily
:
Spermadhesin, CUB domain
(10)
Family
:
Spermadhesin, CUB domain
(9)
Protein domain
:
Complement C1S component
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d4lmfa1
A:2-116
1b
d4lmfd1
D:2-116
1c
d4lmfd3
D:160-277
1d
d4lmfa3
A:160-277
1e
d4lmfb1
B:2-116
1f
d4lmfb3
B:160-277
1g
d4lmfc1
C:2-116
1h
d4lmfc3
C:160-277
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
Complement C1S component
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d4lmfa2
A:117-159
2b
d4lmfb2
B:117-159
2c
d4lmfc2
C:117-159
2d
d4lmfd2
D:117-159
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (372 KB)
Header - Asym.Unit
Biol.Unit 1 (95 KB)
Header - Biol.Unit 1
Biol.Unit 2 (95 KB)
Header - Biol.Unit 2
Biol.Unit 3 (96 KB)
Header - Biol.Unit 3
Biol.Unit 4 (95 KB)
Header - Biol.Unit 4
Biol.Unit 5 (184 KB)
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Biol.Unit 6 (185 KB)
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