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(-) Description

Title :  CRYSTAL STRUCTURE OF CLAP1 BIR3 BOUND TO T3226692
 
Authors :  D. R. Dougan, C. D. Mol, G. P. Snell
Date :  28 Jun 13  (Deposition) - 28 Aug 13  (Release) - 28 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Lap Family, 3 Bir Repeats, Card Domain, 1 Ring-Type Zinc Finger, Ligase-Ligase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Asano, K. Hashimoto, B. Saito, Z. Shiokawa, H. Sumi, M. Yabuki, M. Yoshimatsu, K. Aoyama, T. Hamada, N. Morishita, D. R. Dougan, C. D. Mol, S. Yoshida, T. Ishikawa
Design, Stereoselective Synthesis, And Biological Evaluatio Of Novel Tri-Cyclic Compounds As Inhibitor Of Apoptosis Proteins (Iap) Antagonists.
Bioorg. Med. Chem. V. 21 5725 2013
PubMed-ID: 23928071  |  Reference-DOI: 10.1016/J.BMC.2013.07.020

(-) Compounds

Molecule 1 - BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 2
    Chains: A, B
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BI21 DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: BIR3: UNP RESIDUES 239-331
    Gene: API1, BIRC2, IAP2, MIHB, RNF48
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: C-IAP1, IAP HOMOLOG B, INHIBITOR OF APOPTOSIS PROTEIN 2, IAP-2, HIAP-2, HIAP2, RING FINGER PROTEIN 48, TNFR2-TRAF-SIGNALING COMPLEX PROTEIN 2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
11YH2Ligand/Ion(3S,8AR)-N-((R)-CHROMAN-4-YL)-2-((S)-2-CYCLOHEXYL-2-((S)-2-(METHYLAMINO)PROPANAMIDO)ACETYL)OCTAHYDROPYRROLO[1,2-A]PYRAZINE-3-CARBOXAMIDE
2ZN2Ligand/IonZINC ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
11YH1Ligand/Ion(3S,8AR)-N-((R)-CHROMAN-4-YL)-2-((S)-2-CYCLOHEXYL-2-((S)-2-(METHYLAMINO)PROPANAMIDO)ACETYL)OCTAHYDROPYRROLO[1,2-A]PYRAZINE-3-CARBOXAMIDE
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
11YH1Ligand/Ion(3S,8AR)-N-((R)-CHROMAN-4-YL)-2-((S)-2-CYCLOHEXYL-2-((S)-2-(METHYLAMINO)PROPANAMIDO)ACETYL)OCTAHYDROPYRROLO[1,2-A]PYRAZINE-3-CARBOXAMIDE
2ZN-1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:300 , CYS A:303 , HIS A:320 , CYS A:327BINDING SITE FOR RESIDUE ZN A 401
2AC2SOFTWAREGLN A:261 , ASP A:297 , VAL A:298 , GLY A:306 , LEU A:307 , ARG A:308 , CYS A:309 , ASP A:314 , GLU A:319 , TRP A:323 , ARG B:268 , MET B:271BINDING SITE FOR RESIDUE 1YH A 402
3AC3SOFTWARECYS B:300 , CYS B:303 , HIS B:320 , CYS B:327BINDING SITE FOR RESIDUE ZN B 401
4AC4SOFTWAREASP B:297 , VAL B:298 , GLY B:306 , LEU B:307 , ARG B:308 , CYS B:309 , GLU B:311 , ASP B:314 , GLU B:319 , TRP B:323 , HOH B:509 , HOH B:571BINDING SITE FOR RESIDUE 1YH B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LGU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LGU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LGU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LGU)

(-) Exons   (0, 0)

(no "Exon" information available for 4LGU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:90
                                                                                                                          
               SCOP domains d4lgua_ A: automated matches                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh......hhhhhhhh.eee......eee.....ee.......hhhhhhhhhh..hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                 4lgu A 257 NLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFVDEIQGRY 346
                                   266       276       286       296       306       316       326       336       346


Chain B from PDB  Type:PROTEIN  Length:94
                                                                                                                              
               SCOP domains d4lgub_ B: automated matches                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh......hhhhhhhh.eee......eee.....ee.......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 4lgu B 253 SSISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFVDEIQGRY 346
                                   262       272       282       292       302       312       322       332       342
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LGU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LGU)

(-) Gene Ontology  (60, 60)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BIRC2_HUMAN | Q13490: 1qbh 2l9m 3d9t 3d9u 3m1d 3mup 3oz1 3t6p 3uw4 4eb9 4hy4 4hy5 4kmn 4lge 4mti 4mu7 5m6n

(-) Related Entries Specified in the PDB File

4lge CRYSTAL STRUCTURE OF CLAP1 BIR3 BOUND TO T3261256