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(-) Description

Title :  CRYSTAL STRUCTURE OF CIAP1 BIR3 BOUND TO T3170284
 
Authors :  D. R. Dougan, C. D. Mol, G. P. Snell
Date :  12 Nov 12  (Deposition) - 30 Jan 13  (Release) - 09 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.25
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Iap Family, Bir Repeats, Card Domain, Ring-Type Zinc Finger, Ligase- Ligase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Hashimoto, B. Saito, N. Miyamoto, Y. Oguro, D. Tomita, Z. Shiokawa, M. Asano, H. Kakei, N. Taya, M. Kawasaki, H. Sumi, M. Yabuki, K. Iwai, S. Yoshida, M. Yoshimatsu, K. Aoyama, Y. Kosugi, T. Kojima, N. Morishita, D. R. Dougan, G. P. Snell, S. Imamura, T. Ishikawa
Design And Synthesis Of Potent Inhibitor Of Apoptosis (Iap) Proteins Antagonists Bearing An Octahydropyrrolo[1, 2-A]Pyrazine Scaffold As A Novel Proline Mimetic.
J. Med. Chem. V. 56 1228 2013
PubMed-ID: 23298277  |  Reference-DOI: 10.1021/JM301674Z

(-) Compounds

Molecule 1 - BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 2
    Chains: A, B
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: BIR3 (UNP RESIDUES 254-346)
    Gene: API1, BIRC2, IAP2, MIHB, RNF48
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: C-IAP1, IAP HOMOLOG B, INHIBITOR OF APOPTOSIS PROTEIN 2, IAP-2, HIAP-2, HIAP2, RING FINGER PROTEIN 48, TNFR2-TRAF-SIGNALING COMPLEX PROTEIN 2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
11BG2Ligand/Ion(3S,8AR)-2-{(2S)-2-CYCLOHEXYL-2-[(N-METHYL-L-ALANYL)AMINO]ACETYL}-N-[(1R)-1,2,3,4-TETRAHYDRONAPHTHALEN-1-YL]OCTAHYDROPYRROLO[1,2-A]PYRAZINE-3-CARBOXAMIDE
2ZN2Ligand/IonZINC ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
11BG1Ligand/Ion(3S,8AR)-2-{(2S)-2-CYCLOHEXYL-2-[(N-METHYL-L-ALANYL)AMINO]ACETYL}-N-[(1R)-1,2,3,4-TETRAHYDRONAPHTHALEN-1-YL]OCTAHYDROPYRROLO[1,2-A]PYRAZINE-3-CARBOXAMIDE
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
11BG1Ligand/Ion(3S,8AR)-2-{(2S)-2-CYCLOHEXYL-2-[(N-METHYL-L-ALANYL)AMINO]ACETYL}-N-[(1R)-1,2,3,4-TETRAHYDRONAPHTHALEN-1-YL]OCTAHYDROPYRROLO[1,2-A]PYRAZINE-3-CARBOXAMIDE
2ZN-1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:300 , CYS A:303 , HIS A:320 , CYS A:327BINDING SITE FOR RESIDUE ZN A 401
2AC2SOFTWAREGLY A:306 , LEU A:307 , ARG A:308 , CYS A:309 , GLU A:311 , ASP A:314 , GLU A:319 , TRP A:323 , HOH A:567 , HOH A:601 , HOH A:668BINDING SITE FOR RESIDUE 1BG A 402
3AC3SOFTWARECYS B:300 , CYS B:303 , HIS B:320 , CYS B:327BINDING SITE FOR RESIDUE ZN B 401
4AC4SOFTWAREVAL B:298 , GLY B:306 , LEU B:307 , ARG B:308 , CYS B:309 , GLU B:311 , ASP B:314 , TRP B:323 , HOH B:509 , HOH B:593 , HOH B:612 , HOH B:613 , HOH B:692BINDING SITE FOR RESIDUE 1BG B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HY4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HY4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HY4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HY4)

(-) Exons   (0, 0)

(no "Exon" information available for 4HY4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:92
                                                                                                                            
               SCOP domains d4hy4a_ A: automated matches                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh..........hhhhhhhh.eee......eee.....ee.......hhhhhhhhhh..hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 4hy4 A 255 ISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFVDEIQGRY 346
                                   264       274       284       294       304       314       324       334       344  


Chain B from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains d4hy4b_ B: automated matches                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh..........hhhhhhhh.eee......eee.....ee.......hhhhhhhhhh..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 4hy4 B 252 GSSISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFVDEIQGRY 346
                                   261       271       281       291       301       311       321       331       341
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HY4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HY4)

(-) Gene Ontology  (60, 60)

Asymmetric Unit(hide GO term definitions)

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  4hy4
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BIRC2_HUMAN | Q13490: 1qbh 2l9m 3d9t 3d9u 3m1d 3mup 3oz1 3t6p 3uw4 4eb9 4hy5 4kmn 4lge 4lgu 4mti 4mu7 5m6n

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4HY4)