4LCH - JenaLib

Title :   CRYSTAL STRUCTURE OF THE PSEUDOMONAS AERUGINOSA LPXC/LPC-051 COMPLEX

Authors :   C. -J. Lee, P. Zhou

Date :   21 Jun 13 (Deposition) - 21 Aug 13 (Release) - 25 Sep 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym./Biol. Unit : A

Keywords :   Lipid A Biosynthesis, Lipid A Synthesis, Baab Sandwich, Lpxc, Deacetylation, Acyl Udp-Glcnac, Hydroxamate, Hydrolase-Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   X. Liang, C. J. Lee, J. Zhao, E. J. Toone, P. Zhou
Synthesis, Structure, And Antibiotic Activity Of Aryl-Substituted Lpxc Inhibitors.
J. Med. Chem. V. 56 6954 2013
PubMed-ID: 23914798 | Reference-DOI: 10.1021/JM4007774

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 20)

Sites (20, 20)

Asymmetric Unit (20, 20)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:78 , HIS A:237 , ASP A:241 , 1WN A:304	BINDING SITE FOR RESIDUE ZN A 301
02	AC2	SOFTWARE	HIS A:162 , GLU A:219 , ASP A:277 , ASP A:279	BINDING SITE FOR RESIDUE ZN A 302
03	AC3	SOFTWARE	ARG A:166 , ARG A:272	BINDING SITE FOR RESIDUE ZN A 303
04	AC4	SOFTWARE	LEU A:18 , MET A:62 , GLU A:77 , HIS A:78 , PHE A:112 , GLN A:115 , SER A:116 , THR A:190 , PHE A:191 , ILE A:197 , GLY A:209 , SER A:210 , VAL A:216 , HIS A:237 , ASP A:241 , HIS A:264 , ZN A:301 , NO3 A:316 , HOH A:494 , HOH A:726	BINDING SITE FOR RESIDUE 1WN A 304
05	AC5	SOFTWARE	ILE A:158 , ARG A:168 , THR A:169 , GLN A:170 , ASP A:232 , GLU A:233 , PHE A:234 , VAL A:235 , HOH A:512	BINDING SITE FOR RESIDUE NO3 A 305
06	AC6	SOFTWARE	ILE A:158 , ASP A:159 , PHE A:160 , LYS A:261 , HOH A:655	BINDING SITE FOR RESIDUE NO3 A 306
07	AC7	SOFTWARE	MET A:103 , ASP A:104 , PRO A:109 , GLU A:198 , HOH A:411 , HOH A:476 , HOH A:537 , HOH A:665	BINDING SITE FOR RESIDUE NO3 A 307
08	AC8	SOFTWARE	ILE A:10 , ARG A:12 , ARG A:143 , VAL A:145 , ARG A:258 , PHE A:260 , HOH A:608	BINDING SITE FOR RESIDUE NO3 A 308
09	AC9	SOFTWARE	ARG A:189 , SER A:202 , GLN A:203 , ASN A:204 , ARG A:229 , HOH A:424 , HOH A:504 , HOH A:582 , HOH A:652	BINDING SITE FOR RESIDUE NO3 A 309
10	BC1	SOFTWARE	ARG A:12 , THR A:14 , ARG A:133 , GLU A:134 , PRO A:148 , HOH A:407 , HOH A:482 , HOH A:607	BINDING SITE FOR RESIDUE NO3 A 310
11	BC2	SOFTWARE	TYR A:230 , GLU A:231 , ASP A:232 , LYS A:236 , NO3 A:314	BINDING SITE FOR RESIDUE NO3 A 311
12	BC3	SOFTWARE	TYR A:25 , SER A:96 , PRO A:148 , PHE A:149 , ASP A:150 , HOH A:405 , HOH A:526	BINDING SITE FOR RESIDUE NO3 A 312
13	BC4	SOFTWARE	GLU A:139 , LYS A:142 , GLY A:263 , HIS A:264 , ALA A:265 , LEU A:266 , HOH A:597	BINDING SITE FOR RESIDUE NO3 A 313
14	BC5	SOFTWARE	GLU A:184 , TYR A:230 , LYS A:236 , NO3 A:311 , HOH A:454	BINDING SITE FOR RESIDUE NO3 A 314
15	BC6	SOFTWARE	THR A:14 , GLY A:15 , VAL A:16 , LYS A:23	BINDING SITE FOR RESIDUE NO3 A 315
16	BC7	SOFTWARE	THR A:60 , MET A:62 , GLY A:263 , HIS A:264 , 1WN A:304 , HOH A:704	BINDING SITE FOR RESIDUE NO3 A 316
17	BC8	SOFTWARE	LYS A:23 , ARG A:133 , HOH A:651 , HOH A:721	BINDING SITE FOR RESIDUE NO3 A 317
18	BC9	SOFTWARE	GLN A:115 , SER A:180 , VAL A:182 , HOH A:545	BINDING SITE FOR RESIDUE NO3 A 318
19	CC1	SOFTWARE	THR A:285 , PHE A:286 , GLU A:287 , HOH A:600 , HOH A:664 , HOH A:710 , HOH A:719	BINDING SITE FOR RESIDUE NO3 A 319
20	CC2	SOFTWARE	PHE A:176 , SER A:177 , PRO A:293 , ILE A:294 , SER A:295 , HOH A:435 , HOH A:543 , HOH A:680 , HOH A:732	BINDING SITE FOR RESIDUE NO3 A 320

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:296
                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...eeeeee......eeeeeeee......eeeee......eeee.hhhhh........eee..eee..hhhhhhhhhhh....eeeee...........hhhhhhhhhhhheeeeeee..eeee...eeeee..eeeeee....eeeeee....hhhhh....eeeee....hhhhhh.....eeehhhhhhhhhh...........eee..............hhhhhhhhhhhhhhhhhhh.eeeeeeeee..hhhhhhhhhhhhhhh...eeee...hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lch A   1 MIKQRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFSRTDLDPVVEIPARAENVGETTMSTTLVKGDVKVDTVEHLLSAMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLQEQEAAKKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFDHPVFRGRTQQASVDFSSTSFVKEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVDENRVLNEDGLRYEDEFVKHKILDAIGDLYLLGNSLIGEFRGFKSGHALNNQLLRTLIADKDAWEVVTFEDARTAPISY 296
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

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