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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PSEUDOMONAS AERUGINOSA LPXC/LPC-014 COMPLEX
 
Authors :  C. -J. Lee, P. Zhou
Date :  21 Jun 13  (Deposition) - 21 Aug 13  (Release) - 25 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Lipid A Biosynthesis, Lipid A Synthesis, Baab Sandwich, Lpxc, Deacetylation, Acyl Udp-Glcnac, Hydroxamate, Hydrolase-Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Liang, C. J. Lee, J. Zhao, E. J. Toone, P. Zhou
Synthesis, Structure, And Antibiotic Activity Of Aryl-Substituted Lpxc Inhibitors.
J. Med. Chem. V. 56 6954 2013
PubMed-ID: 23914798  |  Reference-DOI: 10.1021/JM4007774

(-) Compounds

Molecule 1 - UDP-3-O-[3-HYDROXYMYRISTOYL] N-ACETYLGLUCOSAMINE DEACETYLASE
    Chains: A
    EC Number: 3.5.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-299
    Gene: ENVA, LPXC, PA4406
    Mutation: YES
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228
    Synonym: PROTEIN ENVA, UDP-3-O-ACYL-GLCNAC DEACETYLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric/Biological Unit (3, 15)
No.NameCountTypeFull Name
11WL1Ligand/IonNALPHA-{4-[4-(4-AMINOPHENYL)BUTA-1,3-DIYN-1-YL]BENZOYL}-N-HYDROXY-L-HISTIDINAMIDE
2NO311Ligand/IonNITRATE ION
3ZN3Ligand/IonZINC ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:162 , GLU A:219 , ASP A:277 , ASP A:279BINDING SITE FOR RESIDUE ZN A 301
02AC2SOFTWAREARG A:166BINDING SITE FOR RESIDUE ZN A 302
03AC3SOFTWAREMET A:62 , GLU A:77 , HIS A:78 , PHE A:112 , GLN A:115 , SER A:116 , THR A:190 , PHE A:191 , ILE A:197 , GLY A:209 , SER A:210 , VAL A:216 , HIS A:237 , ASP A:241 , HIS A:264 , NO3 A:309 , ZN A:311 , HOH A:622 , HOH A:651 , HOH A:657BINDING SITE FOR RESIDUE 1WL A 303
04AC4SOFTWAREILE A:158 , ARG A:168 , THR A:169 , GLN A:170 , ASP A:232 , GLU A:233 , PHE A:234 , VAL A:235 , HOH A:465BINDING SITE FOR RESIDUE NO3 A 304
05AC5SOFTWAREILE A:10 , ARG A:12 , ARG A:143 , ARG A:258 , PHE A:260BINDING SITE FOR RESIDUE NO3 A 305
06AC6SOFTWAREILE A:158 , ASP A:159 , PHE A:160 , LYS A:261 , HOH A:621BINDING SITE FOR RESIDUE NO3 A 306
07AC7SOFTWAREARG A:189 , SER A:202 , GLN A:203 , ASN A:204 , ARG A:229 , HOH A:422 , HOH A:467 , HOH A:520 , HOH A:559BINDING SITE FOR RESIDUE NO3 A 307
08AC8SOFTWAREGLU A:139 , LYS A:142 , LYS A:261 , SER A:262 , GLY A:263 , ALA A:265 , LEU A:266 , HOH A:586BINDING SITE FOR RESIDUE NO3 A 308
09AC9SOFTWARETHR A:61 , LYS A:238 , GLY A:263 , HIS A:264 , 1WL A:303 , HOH A:452 , HOH A:478BINDING SITE FOR RESIDUE NO3 A 309
10BC1SOFTWAREALA A:31 , PRO A:32 , GLN A:122 , HOH A:441BINDING SITE FOR RESIDUE NO3 A 310
11BC2SOFTWAREHIS A:78 , HIS A:237 , ASP A:241 , 1WL A:303BINDING SITE FOR RESIDUE ZN A 311
12BC3SOFTWAREARG A:12 , THR A:14 , ARG A:133 , GLU A:134 , PRO A:148 , HOH A:402 , HOH A:491 , HOH A:631BINDING SITE FOR RESIDUE NO3 A 312
13BC4SOFTWARETYR A:25 , SER A:96 , PRO A:148 , PHE A:149 , ASP A:150 , HOH A:412 , HOH A:433 , HOH A:489BINDING SITE FOR RESIDUE NO3 A 313
14BC5SOFTWARETYR A:230 , GLU A:231 , ASP A:232 , LYS A:236BINDING SITE FOR RESIDUE NO3 A 314
15BC6SOFTWAREPHE A:176 , SER A:177 , PRO A:293 , ILE A:294 , SER A:295 , HOH A:454 , HOH A:563 , HOH A:594 , HOH A:632BINDING SITE FOR RESIDUE NO3 A 315

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LCF)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asp A:45 -Pro A:46

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LCF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LCF)

(-) Exons   (0, 0)

(no "Exon" information available for 4LCF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:298
                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...eeeeee......eeeeeeee......eeeee......eeee.hhhhh........eee..eee..hhhhhhhhhhh....eeeee...........hhhhhhhhhhhheeeeeee..eeee...eeeee..eeeeee....eeeeee....hhhhh....eeeee....hhhhhh.....eeehhhhhhhhhh...........eee..............hhhhhhhhhhhhhhhhhhh.eeeeeeeee..hhhhhhhhhhhhhhh...eeee...hhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lcf A   1 MIKQRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFSRTDLDPVVEIPARAENVGETTMSTTLVKGDVKVDTVEHLLSAMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLQEQEAAKKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFDHPVFRGRTQQASVDFSSTSFVKEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVDENRVLNEDGLRYEDEFVKHKILDAIGDLYLLGNSLIGEFRGFKSGHALNNQLLRTLIADKDAWEVVTFEDARTAPISYMR 298
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LCF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LCF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LCF)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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    Asp A:45 - Pro A:46   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LPXC_PSEAE | P47205: 2ves 3p3e 3u1y 3uhm 4fw3 4fw4 4fw5 4fw6 4fw7 4j3d 4lcg 4lch 4okg 5drq 5drr 5n8c 5u39 5u3b 5upg 5vwm

(-) Related Entries Specified in the PDB File

4lcg 4lch