PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4LCH
Asym. Unit
Info
Asym.Unit (63 KB)
Biol.Unit 1 (57 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE PSEUDOMONAS AERUGINOSA LPXC/LPC-051 COMPLEX
Authors
:
C. -J. Lee, P. Zhou
Date
:
21 Jun 13 (Deposition) - 21 Aug 13 (Release) - 25 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Lipid A Biosynthesis, Lipid A Synthesis, Baab Sandwich, Lpxc, Deacetylation, Acyl Udp-Glcnac, Hydroxamate, Hydrolase-Antibiotic Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Liang, C. J. Lee, J. Zhao, E. J. Toone, P. Zhou
Synthesis, Structure, And Antibiotic Activity Of Aryl-Substituted Lpxc Inhibitors.
J. Med. Chem. V. 56 6954 2013
[
close entry info
]
Hetero Components
(3, 20)
Info
All Hetero Components
1a: (BETAS)-NALPHA-{4-[4-(4-AMINOPHENY... (1WNa)
2a: NITRATE ION (NO3a)
2b: NITRATE ION (NO3b)
2c: NITRATE ION (NO3c)
2d: NITRATE ION (NO3d)
2e: NITRATE ION (NO3e)
2f: NITRATE ION (NO3f)
2g: NITRATE ION (NO3g)
2h: NITRATE ION (NO3h)
2i: NITRATE ION (NO3i)
2j: NITRATE ION (NO3j)
2k: NITRATE ION (NO3k)
2l: NITRATE ION (NO3l)
2m: NITRATE ION (NO3m)
2n: NITRATE ION (NO3n)
2o: NITRATE ION (NO3o)
2p: NITRATE ION (NO3p)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1WN
1
Ligand/Ion
(BETAS)-NALPHA-{4-[4-(4-AMINOPHENYL)BUTA-1,3-DIYN-1-YL]BENZOYL}-N,BETA-DIHYDROXY-BETA-METHYL-L-TYROSINAMIDE
2
NO3
16
Ligand/Ion
NITRATE ION
3
ZN
3
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:78 , HIS A:237 , ASP A:241 , 1WN A:304
BINDING SITE FOR RESIDUE ZN A 301
02
AC2
SOFTWARE
HIS A:162 , GLU A:219 , ASP A:277 , ASP A:279
BINDING SITE FOR RESIDUE ZN A 302
03
AC3
SOFTWARE
ARG A:166 , ARG A:272
BINDING SITE FOR RESIDUE ZN A 303
04
AC4
SOFTWARE
LEU A:18 , MET A:62 , GLU A:77 , HIS A:78 , PHE A:112 , GLN A:115 , SER A:116 , THR A:190 , PHE A:191 , ILE A:197 , GLY A:209 , SER A:210 , VAL A:216 , HIS A:237 , ASP A:241 , HIS A:264 , ZN A:301 , NO3 A:316 , HOH A:494 , HOH A:726
BINDING SITE FOR RESIDUE 1WN A 304
05
AC5
SOFTWARE
ILE A:158 , ARG A:168 , THR A:169 , GLN A:170 , ASP A:232 , GLU A:233 , PHE A:234 , VAL A:235 , HOH A:512
BINDING SITE FOR RESIDUE NO3 A 305
06
AC6
SOFTWARE
ILE A:158 , ASP A:159 , PHE A:160 , LYS A:261 , HOH A:655
BINDING SITE FOR RESIDUE NO3 A 306
07
AC7
SOFTWARE
MET A:103 , ASP A:104 , PRO A:109 , GLU A:198 , HOH A:411 , HOH A:476 , HOH A:537 , HOH A:665
BINDING SITE FOR RESIDUE NO3 A 307
08
AC8
SOFTWARE
ILE A:10 , ARG A:12 , ARG A:143 , VAL A:145 , ARG A:258 , PHE A:260 , HOH A:608
BINDING SITE FOR RESIDUE NO3 A 308
09
AC9
SOFTWARE
ARG A:189 , SER A:202 , GLN A:203 , ASN A:204 , ARG A:229 , HOH A:424 , HOH A:504 , HOH A:582 , HOH A:652
BINDING SITE FOR RESIDUE NO3 A 309
10
BC1
SOFTWARE
ARG A:12 , THR A:14 , ARG A:133 , GLU A:134 , PRO A:148 , HOH A:407 , HOH A:482 , HOH A:607
BINDING SITE FOR RESIDUE NO3 A 310
11
BC2
SOFTWARE
TYR A:230 , GLU A:231 , ASP A:232 , LYS A:236 , NO3 A:314
BINDING SITE FOR RESIDUE NO3 A 311
12
BC3
SOFTWARE
TYR A:25 , SER A:96 , PRO A:148 , PHE A:149 , ASP A:150 , HOH A:405 , HOH A:526
BINDING SITE FOR RESIDUE NO3 A 312
13
BC4
SOFTWARE
GLU A:139 , LYS A:142 , GLY A:263 , HIS A:264 , ALA A:265 , LEU A:266 , HOH A:597
BINDING SITE FOR RESIDUE NO3 A 313
14
BC5
SOFTWARE
GLU A:184 , TYR A:230 , LYS A:236 , NO3 A:311 , HOH A:454
BINDING SITE FOR RESIDUE NO3 A 314
15
BC6
SOFTWARE
THR A:14 , GLY A:15 , VAL A:16 , LYS A:23
BINDING SITE FOR RESIDUE NO3 A 315
16
BC7
SOFTWARE
THR A:60 , MET A:62 , GLY A:263 , HIS A:264 , 1WN A:304 , HOH A:704
BINDING SITE FOR RESIDUE NO3 A 316
17
BC8
SOFTWARE
LYS A:23 , ARG A:133 , HOH A:651 , HOH A:721
BINDING SITE FOR RESIDUE NO3 A 317
18
BC9
SOFTWARE
GLN A:115 , SER A:180 , VAL A:182 , HOH A:545
BINDING SITE FOR RESIDUE NO3 A 318
19
CC1
SOFTWARE
THR A:285 , PHE A:286 , GLU A:287 , HOH A:600 , HOH A:664 , HOH A:710 , HOH A:719
BINDING SITE FOR RESIDUE NO3 A 319
20
CC2
SOFTWARE
PHE A:176 , SER A:177 , PRO A:293 , ILE A:294 , SER A:295 , HOH A:435 , HOH A:543 , HOH A:680 , HOH A:732
BINDING SITE FOR RESIDUE NO3 A 320
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (63 KB)
Header - Asym.Unit
Biol.Unit 1 (57 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4LCH
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
