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(-) Description

Title :  CRYSTAL STRUCTURE OF A BILE-ACID 7-ALPHA DEHYDRATASE (CLOHIR_00079) FROM CLOSTRIDIUM HIRANONIS DSM 13275 AT 1.60 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  17 Jun 13  (Deposition) - 21 Aug 13  (Release) - 21 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Cystatin-Like, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Bile-Acid 7-Alpha Dehydratase (Clohir_00079) From Clostridium Hiranonis Dsm 13275 At 1. 60 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BILE ACID 7A-DEHYDRATASE, BAIE
    Chains: A
    EC Number: 4.2.1.106
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BAIE, CLOHIR_00079
    Organism Scientific: CLOSTRIDIUM HIRANONIS DSM 13275
    Organism Taxid: 500633

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 10)

Asymmetric Unit (5, 10)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2MSE6Mod. Amino AcidSELENOMETHIONINE
3NA1Ligand/IonSODIUM ION
4NI1Ligand/IonNICKEL (II) ION
5PGE1Ligand/IonTRIETHYLENE GLYCOL
Biological Unit 1 (3, 24)
No.NameCountTypeFull Name
11PE3Ligand/IonPENTAETHYLENE GLYCOL
2MSE18Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION
4NI-1Ligand/IonNICKEL (II) ION
5PGE3Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:86 , HOH A:321BINDING SITE FOR RESIDUE NI A 201
2AC2SOFTWAREGLU A:105 , HOH A:350BINDING SITE FOR RESIDUE NA A 202
3AC3SOFTWAREPHE A:152 , MSE A:153 , ASP A:155 , LYS A:157BINDING SITE FOR RESIDUE PGE A 203
4AC4SOFTWARETYR A:30 , SER A:55 , ASP A:56 , LEU A:71 , TYR A:126 , THR A:142 , HOH A:313 , HOH A:323 , HOH A:325 , HOH A:351BINDING SITE FOR RESIDUE 1PE A 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4L8P)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4L8P)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L8P)

(-) Exons   (0, 0)

(no "Exon" information available for 4L8P)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:168
                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........ee....ee.hhhhhhhhhhhhh...eeeeeeeeeeeeee....eeeeeeeeeeeeee.......eeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4l8p A   0 GmTLEARIEALEKEIQRLNDIEAIKQLKAKYFRCLDGKLWDELETTLSPNIETSYSDGKLVFHSPKEVTEYLAAAmPKEEISmHmGHTPEITIDSENTATGRWYLEDNLIFTDGKYKNVGINGGAFYTDKYEKIDGQWYIKETGYVRIFEEHFmRDPKIHITSNmHKE 167
                             |       9        19        29        39        49        59        69     |  79  | |   89        99       109       119       129       139       149   |   159    |   
                             |                                                                        75-MSE 82-MSE                                                                153-MSE    164-MSE
                             1-MSE                                                                             84-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4L8P)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L8P)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L8P)

(-) Gene Ontology  (2, 2)

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 Related Entries

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        Q9RB47_9FIRM | Q9RB47: 4n3v

(-) Related Entries Specified in the PDB File

4l8o CRYSTAL STRUCTURE OF A BILE-ACID 7-ALPHA DEHYDRATASE (CLOHYLEM_06634) FROM CLOSTRIDIUM HYLEMONAE DSM 15053 AT 2.20 A RESOLUTION - ORTHOLOG STRUCTURE
4leh CRYSTAL STRUCTURE OF A BILE-ACID 7-ALPHA DEHYDRATASE (CLOSCI_03134) FROM CLOSTRIDIUM SCINDENS ATCC 35704 AT 2.90 A RESOLUTION - ORTHOLOG STRUCTURE