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(-) Description

Title :  CRYSTAL STRUCTURE OF A BILE-ACID 7-ALPHA DEHYDRATASE (CLOHYLEM_06634) FROM CLOSTRIDIUM HYLEMONAE DSM 15053 AT 2.20 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  17 Jun 13  (Deposition) - 21 Aug 13  (Release) - 21 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Snoal-Like Domain, Pf13577 Family Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Bile-Acid 7-Alpha Dehydratase (Clohylem_06634) From Clostridium Hylemonae Dsm 15053 At 2. 20 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BILE ACID 7A-DEHYDRATASE, BAIE
    Chains: A
    EC Number: 4.2.1.106
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BAIE, CLOHYLEM_06634
    Organism Scientific: CLOSTRIDIUM HYLEMONAE DSM 15053
    Organism Taxid: 553973

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric Unit (4, 7)
No.NameCountTypeFull Name
1CO1Ligand/IonCOBALT (II) ION
2EDO4Ligand/Ion1,2-ETHANEDIOL
3NA1Ligand/IonSODIUM ION
4SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 15)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
2EDO12Ligand/Ion1,2-ETHANEDIOL
3NA-1Ligand/IonSODIUM ION
4SO43Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:86 , HOH A:301BINDING SITE FOR RESIDUE CO A 201
2AC2SOFTWAREGLU A:105 , HOH A:370BINDING SITE FOR RESIDUE NA A 202
3AC3SOFTWARELYS A:24 , HOH A:317 , HOH A:318BINDING SITE FOR RESIDUE SO4 A 203
4AC4SOFTWAREHIS A:152BINDING SITE FOR RESIDUE EDO A 204
5AC5SOFTWAREHIS A:62 , THR A:128 , LYS A:130 , GLU A:142 , THR A:143 , GLY A:144 , HOH A:360BINDING SITE FOR RESIDUE EDO A 205
6AC6SOFTWARETHR A:52 , SER A:53 , TYR A:54 , TYR A:70BINDING SITE FOR RESIDUE EDO A 206
7AC7SOFTWAREGLU A:151 , PHE A:153 , ILE A:159BINDING SITE FOR RESIDUE EDO A 207

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4L8O)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4L8O)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4L8O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L8O)

(-) Exons   (0, 0)

(no "Exon" information available for 4L8O)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:165
                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh......eee...eeehhhhhhhhhhhhh...eeeeeeeeeeeeeeee..eeeeeeeeeeeeee........eeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeee.............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l8o A   1 MSIEERLEALEKEIQKMKDIEEIKKLKGQYFRCLDGKFWDELETTLSPNIVTSYKLVFHGPKEVTDYFKKAMPREEISMHMGHTPEITIDSETTATGRWYLEDKLIFTEESKYAGSGVNGGAFYTDKYEKVDGKWYILETGYLRVYEEHFMRDPKIKITMNMHKT 168
                                    10        20        30        40        50   ||   63        73        83        93       103       113       123       133       143       153       163     
                                                                                54|                                                                                                              
                                                                                 58
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4L8O)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L8O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L8O)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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(-) Related Entries Specified in the PDB File

4l8p CRYSTAL STRUCTURE OF A BILE-ACID 7-ALPHA DEHYDRATASE (CLOHIR_00079) FROM CLOSTRIDIUM HIRANONIS DSM 13275 AT 1.60 A RESOLUTION - ORTHOLOG STRUCTURE
4leh CRYSTAL STRUCTURE OF A BILE-ACID 7-ALPHA DEHYDRATASE (CLOSCI_03134) FROM CLOSTRIDIUM SCINDENS ATCC 35704 AT 2.90 A RESOLUTION - ORTHOLOG STRUCTURE