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(-) Description

Title :  CRYSTAL STRUCTURES OF C143S XANTHOMONAS CAMPESTRIS OLEA WITH BOUND LAURIC ACID AND LAUROYL-COA
 
Authors :  B. R. Goblirsch
Date :  21 May 13  (Deposition) - 23 Jul 14  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.17
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Thiolase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. R. Goblirsch, M. R. Jensen, F. A. Mohamed, L. P. Wackett, C. M. Wilmot
Substrate Trapping In Crystals Of The Thiolase Olea Identifies Three Channels That Enable Long Chain Olefin Biosynthesis.
J. Biol. Chem. V. 291 26698 2016
PubMed-ID: 27815501  |  Reference-DOI: 10.1074/JBC.M116.760892

(-) Compounds

Molecule 1 - 3-OXOACYL-[ACP] SYNTHASE III
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FABH, XCC0212
    Organism Scientific: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS
    Organism Taxid: 190485
    Strain: ATCC 33913 / NCPPB 528 / LMG 568

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
1DAO1Ligand/IonLAURIC ACID
2DCC1Ligand/IonDODECYL-COA
3PEG5Ligand/IonDI(HYDROXYETHYL)ETHER
4PO41Ligand/IonPHOSPHATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:35 , MET A:307 , HIS A:313 , LYS A:327 , GLU A:330 , HOH A:545BINDING SITE FOR RESIDUE PEG A 401
2AC2SOFTWARETHR A:248 , THR A:250 , VAL A:287 , SER A:288 , HOH A:634 , HOH A:686BINDING SITE FOR RESIDUE PEG A 402
3AC3SOFTWAREMET A:21 , PHE A:23 , ASP A:151 , GLY A:226 , GLY A:227 , HOH A:580 , HOH A:581BINDING SITE FOR RESIDUE PEG A 403
4AC4SOFTWAREARG A:48 , GLU A:178 , GLU A:182 , MET B:307 , ILE B:309 , HIS B:313 , LYS B:327 , HOH B:651BINDING SITE FOR RESIDUE PO4 A 404
5AC5SOFTWAREALA B:142 , SER B:143 , LEU B:253 , ILE B:284 , HIS B:285 , HIS B:291 , ASN B:315 , GLY B:346 , SER B:347 , DCC B:403BINDING SITE FOR RESIDUE DAO B 401
6AC6SOFTWARELYS B:102 , ASP B:163 , PEG B:404BINDING SITE FOR RESIDUE PEG B 402
7AC7SOFTWARETHR B:60 , VAL B:62 , VAL B:66 , ALA B:67 , SER B:112 , GLU B:171 , THR B:172 , ARG B:195 , LEU B:198 , ALA B:199 , LEU B:203 , CYS B:239 , ASN B:242 , LEU B:243 , MET B:246 , THR B:250 , ARG B:251 , SER B:288 , GLY B:317 , SER B:347 , DAO B:401 , HOH B:605 , HOH B:618 , HOH B:661BINDING SITE FOR RESIDUE DCC B 403
8AC8SOFTWARELEU A:56 , LYS B:102 , ASP B:163 , PEG B:402 , HOH B:546BINDING SITE FOR RESIDUE PEG B 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KU5)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Glu A:117 -Pro A:118
2Gly A:348 -Leu A:349
3Glu B:117 -Pro B:118
4Gly B:348 -Leu B:349

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KU5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KU5)

(-) Exons   (0, 0)

(no "Exon" information available for 4KU5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:339
                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeee..eeeehhhhhhhhhhhhhhhh.............eeee.....hhhhhhhhhhhhhhhhh..hhh.eeeeee..........hhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhhh....hhhhhhhhhhhhhh..eeeeeeeee.hhh....eeeeeeeee.hhhh..eee....eeehhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeee...hhhhhhhhhhhh..hhhhh..hhhhhh.hhhhhhhhhhhhhhhh.......eeeeeeee...eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ku5 A  20 HMLFQNVSIAGLAHIDAPHTLTSKEINERLQPTYDRLGIKTDVLGDVAGIHARRLWDQDVQASDAATQAARKALIDANIGIEKIGLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVANASLAFINGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARSELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQKTFVAAKQVLGWAVEELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 358
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349         


Chain B from PDB  Type:PROTEIN  Length:337
                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee..eeeehhhhhhhhhhhhhhhh...hhhhhh....eeee.....hhhhhhhhhhhhhhhhhh.hhhhh.eeee..........hhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhhhh...hhhhhhhhhhhhhh..eeeeeeeee.hhh....eeeeeeeee.hhhh..eeee..eeeehhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeee...hhhhhhhhhhhhh.hhhhh..hhhhhh.hhhhhhhhhhhhhhhh.......eeeeeeee...eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ku5 B  22 LFQNVSIAGLAHIDAPHTLTSKEINERLQPTYDRLGIKTDVLGDVAGIHARRLWDQDVQASDAATQAARKALIDANIGIEKIGLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVANASLAFINGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARSELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQKTFVAAKQVLGWAVEELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 358
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KU5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KU5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KU5)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Glu A:117 - Pro A:118   [ RasMol ]  
    Glu B:117 - Pro B:118   [ RasMol ]  
    Gly A:348 - Leu A:349   [ RasMol ]  
    Gly B:348 - Leu B:349   [ RasMol ]  
 

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 Related Entries

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        Q8PDX2_XANCP | Q8PDX2: 3row 3s1z 3s20 3s21 3s23 4kti 4ktm 4ku2 4ku3

(-) Related Entries Specified in the PDB File

3row 4kti 4ktm 4ku2 4ku3