PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4KU5
Asym. Unit
Info
Asym.Unit (233 KB)
Biol.Unit 1 (227 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURES OF C143S XANTHOMONAS CAMPESTRIS OLEA WITH BOUND LAURIC ACID AND LAUROYL-COA
Authors
:
B. R. Goblirsch
Date
:
21 May 13 (Deposition) - 23 Jul 14 (Release) - 11 Jan 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.17
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Thiolase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. R. Goblirsch, M. R. Jensen, F. A. Mohamed, L. P. Wackett, C. M. Wilmot
Substrate Trapping In Crystals Of The Thiolase Olea Identifies Three Channels That Enable Long Chain Olefin Biosynthesis.
J. Biol. Chem. V. 291 26698 2016
[
close entry info
]
Hetero Components
(4, 8)
Info
All Hetero Components
1a: LAURIC ACID (DAOa)
2a: DODECYL-COA (DCCa)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
3c: DI(HYDROXYETHYL)ETHER (PEGc)
3d: DI(HYDROXYETHYL)ETHER (PEGd)
3e: DI(HYDROXYETHYL)ETHER (PEGe)
4a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DAO
1
Ligand/Ion
LAURIC ACID
2
DCC
1
Ligand/Ion
DODECYL-COA
3
PEG
5
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
PO4
1
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:35 , MET A:307 , HIS A:313 , LYS A:327 , GLU A:330 , HOH A:545
BINDING SITE FOR RESIDUE PEG A 401
2
AC2
SOFTWARE
THR A:248 , THR A:250 , VAL A:287 , SER A:288 , HOH A:634 , HOH A:686
BINDING SITE FOR RESIDUE PEG A 402
3
AC3
SOFTWARE
MET A:21 , PHE A:23 , ASP A:151 , GLY A:226 , GLY A:227 , HOH A:580 , HOH A:581
BINDING SITE FOR RESIDUE PEG A 403
4
AC4
SOFTWARE
ARG A:48 , GLU A:178 , GLU A:182 , MET B:307 , ILE B:309 , HIS B:313 , LYS B:327 , HOH B:651
BINDING SITE FOR RESIDUE PO4 A 404
5
AC5
SOFTWARE
ALA B:142 , SER B:143 , LEU B:253 , ILE B:284 , HIS B:285 , HIS B:291 , ASN B:315 , GLY B:346 , SER B:347 , DCC B:403
BINDING SITE FOR RESIDUE DAO B 401
6
AC6
SOFTWARE
LYS B:102 , ASP B:163 , PEG B:404
BINDING SITE FOR RESIDUE PEG B 402
7
AC7
SOFTWARE
THR B:60 , VAL B:62 , VAL B:66 , ALA B:67 , SER B:112 , GLU B:171 , THR B:172 , ARG B:195 , LEU B:198 , ALA B:199 , LEU B:203 , CYS B:239 , ASN B:242 , LEU B:243 , MET B:246 , THR B:250 , ARG B:251 , SER B:288 , GLY B:317 , SER B:347 , DAO B:401 , HOH B:605 , HOH B:618 , HOH B:661
BINDING SITE FOR RESIDUE DCC B 403
8
AC8
SOFTWARE
LEU A:56 , LYS B:102 , ASP B:163 , PEG B:402 , HOH B:546
BINDING SITE FOR RESIDUE PEG B 404
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (233 KB)
Header - Asym.Unit
Biol.Unit 1 (227 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4KU5
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
