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(-) Description

Title :  CRYSTAL STRUCTURE OF C143S XANTHOMONAS CAMPESTRIS OLEA
 
Authors :  B. R. Goblirsch
Date :  20 May 13  (Deposition) - 23 Jul 14  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.36
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Thiolase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. R. Goblirsch, M. R. Jensen, F. A. Mohamed, L. P. Wackett, C. M. Wilmot
Substrate Trapping In Crystals Of The Thiolase Olea Identifies Three Channels That Enable Long Chain Olefin Biosynthesis.
J. Biol. Chem. V. 291 26698 2016
PubMed-ID: 27815501  |  Reference-DOI: 10.1074/JBC.M116.760892

(-) Compounds

Molecule 1 - 3-OXOACYL-[ACP] SYNTHASE III
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FABH, XCC0212
    Mutation: YES
    Organism Scientific: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS
    Organism Taxid: 190485
    Strain: ATCC 33913 / NCPPB 528 / LMG 568

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
2PO41Ligand/IonPHOSPHATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:242 , ARG A:245 , VAL A:247 , HOH A:568 , HOH A:633 , HOH A:687BINDING SITE FOR RESIDUE PEG A 401
2AC2SOFTWAREHIS A:20 , MET A:21 , PHE A:23 , GLY A:227BINDING SITE FOR RESIDUE PEG A 402
3AC3SOFTWAREALA B:199 , THR B:248 , THR B:250 , VAL B:287BINDING SITE FOR RESIDUE PEG B 401
4AC4SOFTWARELYS B:102 , ASP B:163 , HOH B:561 , HOH B:623BINDING SITE FOR RESIDUE PEG B 402
5AC5SOFTWAREARG A:48 , GLU A:178 , HOH A:698 , ARG B:73 , GLU B:312 , HIS B:313 , HOH B:641BINDING SITE FOR RESIDUE PO4 B 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KTM)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Glu A:117 -Pro A:118
2Gly A:348 -Leu A:349
3Glu B:117 -Pro B:118
4Gly B:348 -Leu B:349

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KTM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KTM)

(-) Exons   (0, 0)

(no "Exon" information available for 4KTM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:340
                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeee..eeeehhhhhhhhhhhhhhh..............eeee.....hhhhhhhhhhhhhhhhhh.hhh.eeeeee..........hhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhhhhh...eeeeeeee.hhhhhhhhhhhhh....hhhhhhhhhhhhhh..eeeeeeeee........eeeeeeeee.hhhh..eee....eeehhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeee...hhhhhhhhhhhh..hhhhh..hhhhhh.hhhhhhhhhhhhhhhh.......eeeeeeee...eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ktm A  19 SHMLFQNVSIAGLAHIDAPHTLTSKEINERLQPTYDRLGIKTDVLGDVAGIHARRLWDQDVQASDAATQAARKALIDANIGIEKIGLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVANASLAFINGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARSELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQKTFVAAKQVLGWAVEELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 358
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358


Chain B from PDB  Type:PROTEIN  Length:338
                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee..eeeehhhhhhhhhhhhhh.....hhhhhh....eeee.....hhhhhhhhhhhhhhhhhh.hhh.eeeeee..........hhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhhh....hhhhhhhhhhhhhh..eeeeeeeee.hhh....eeeeeeeee.hhhh..eeee..eeeehhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeee...hhhhhhhhhhhh..hhhhh..hhhhhh.hhhhhhhhhhhhhhhh.......eeeeeeee...eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ktm B  21 MLFQNVSIAGLAHIDAPHTLTSKEINERLQPTYDRLGIKTDVLGDVAGIHARRLWDQDVQASDAATQAARKALIDANIGIEKIGLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVANASLAFINGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARSELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQKTFVAAKQVLGWAVEELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 358
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KTM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KTM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KTM)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Glu A:117 - Pro A:118   [ RasMol ]  
    Glu B:117 - Pro B:118   [ RasMol ]  
    Gly A:348 - Leu A:349   [ RasMol ]  
    Gly B:348 - Leu B:349   [ RasMol ]  
 

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 Related Entries

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UniProtKB/TrEMBL
        Q8PDX2_XANCP | Q8PDX2: 3row 3s1z 3s20 3s21 3s23 4kti 4ku2 4ku3 4ku5

(-) Related Entries Specified in the PDB File

3row 3s21 3s23 4kt1