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(-) Description

Title :  GUMBY/FAM105B IN COMPLEX WITH LINEAR DI-UBIQUITIN
 
Authors :  Y. -C. Juang, D. F. Ceccarelli, F. Sicheri
Date :  17 May 13  (Deposition) - 05 Jun 13  (Release) - 12 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.83
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  I,J  (1x)
Biol. Unit 6:  K,L  (1x)
Biol. Unit 7:  M,N  (1x)
Biol. Unit 8:  O,P  (1x)
Biol. Unit 9:  Q,R  (1x)
Biol. Unit 10:  S,T  (1x)
Biol. Unit 11:  U,V  (1x)
Biol. Unit 12:  W,X  (1x)
Keywords :  Otu Domain, Deubiquitinase, Linear Diubiquitin, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Rivkin, S. M. Almeida, D. F. Ceccarelli, Y. C. Juang, T. A. Maclean, T. Srikumar, H. Huang, W. H. Dunham, R. Fukumura, G. Xie, Y. Gondo, B. Raught, A. C. Gingras, F. Sicheri, S. P. Cordes
The Linear Ubiquitin-Specific Deubiquitinase Gumby Regulate Angiogenesis.
Nature V. 498 318 2013
PubMed-ID: 23708998  |  Reference-DOI: 10.1038/NATURE12296

(-) Compounds

Molecule 1 - PROTEIN FAM105B
    Chains: A, B, E, G, I, K, M, O, Q, S, U, W
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PROEX
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: OTU DOMAIN (UNP RESIDUES 79-352)
    Gene: FAM105B
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - POLYUBIQUITIN-C
    Chains: D, C, F, H, J, L, N, P, R, T, V, X
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETM30
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: LINEAR DIUBIQUITIN (UNP RESIDUES 76-228)
    Gene: UBC
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: UBIQUITIN

 Structural Features

(-) Chains, Units

  123456789101112131415161718192021222324
Asymmetric Unit : ABCDEFGHIJKLMNOPQRSTUVWX
Biological Unit 1 (1x): A  D                    
Biological Unit 2 (1x):  BC                     
Biological Unit 3 (1x):     EF                  
Biological Unit 4 (1x):       GH                
Biological Unit 5 (1x):         IJ              
Biological Unit 6 (1x):           KL            
Biological Unit 7 (1x):             MN          
Biological Unit 8 (1x):               OP        
Biological Unit 9 (1x):                 QR      
Biological Unit 10 (1x):                   ST    
Biological Unit 11 (1x):                     UV  
Biological Unit 12 (1x):                       WX

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4KSL)

(-) Sites  (0, 0)

(no "Site" information available for 4KSL)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KSL)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Tyr A:319 -Pro A:320
2Tyr B:319 -Pro B:320
3Tyr E:319 -Pro E:320
4Tyr G:319 -Pro G:320
5Tyr I:319 -Pro I:320
6Tyr K:319 -Pro K:320
7Tyr M:319 -Pro M:320
8Tyr O:319 -Pro O:320
9Tyr Q:319 -Pro Q:320
10Tyr S:319 -Pro S:320
11Tyr U:319 -Pro U:320
12Tyr W:319 -Pro W:320

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KSL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KSL)

(-) Exons   (0, 0)

(no "Exon" information available for 4KSL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eehhhhhhhhh...hhhhhhhhhhhhhhhhhh.eee......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhh......hhhhhhhhhhhhh......hhhhhhhhhhhhh.eeeeee.hhh.....eeee.........eeeeee.......eee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ksl A   79 RLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSIRRVRGDNYAALRATLFQAMSQAVGLPPWLQDPELMLLPEKLISKYNWIKQWKLNEDLVDKIKESLTLLRKKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLMLNRAIELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYNTEEFITVYPTDPPKDWPVVTLIAEDDRHYNIPVRVCE  348
                                    88        98       108       118       128       138       148       158       168    || 185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345   
                                                                                                                        173|                                                                                                                                                                       
                                                                                                                         181                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eehhhhhhhhh...hhhhhhhhhhhhhhhhhh.eee......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh.....hhhhhhhhhhhhh......hhhhhhhhhhhhh.eeeeee.hhh.....eeee.........eeeeee.......eee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ksl B   79 RLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSIRRVRGDNYAALRATLFQAMSQAVGLPPWLQDPELMLLPEKLISKYNWIKQWKLNEDLVDKIKESLTLLRKKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLMLNRAIELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYNTEEFITVYPTDPPKDWPVVTLIAEDDRHYNIPVRVCE  348
                                    88        98       108       118       128       138       148       158       168    || 185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345   
                                                                                                                        173|                                                                                                                                                                       
                                                                                                                         181                                                                                                                                                                       


Chain C from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                       
               SCOP domains d4kslc1 C:0-76 Ubiquitin                                                     d4kslc2 C:1001-1073 Ubiquitin                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....eeeeee....hhhhhhhhhhhhhh.hhhhh.eee..ee......hhhhh.....eeee.......eeeeeee....eeeeee....hhhhhhhhhhhhhh.hhh.eeeee..ee................eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4ksl C    0 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 1073
                                     9        19        29        39        49        59        69      1003      1013      1023      1033      1043      1053      1063      1073
                                                                                                       76|                                                                        
                                                                                                      1001                                                                        


Chain D from PDB  Type:PROTEIN  Length:149
                                                                                                                                                                                      
               SCOP domains d4ksld1 D:1-76 Ubiquitin                                                    d4ksld2 D:1001-1073 Ubiquitin                                             SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhhhh.eee..ee......hhhhh.....eeee.......eeeeeee....eeeeee....hhhhhhhhhhhhhh.hhh.eeeee..ee................eeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ksl D    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 1073
                                    10        20        30        40        50        60        70     |1004      1014      1024      1034      1044      1054      1064         
                                                                                                      76|                                                                        
                                                                                                     1001                                                                        


Chain E from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eehhhhhhhhh...hhhhhhhhhhhhhhhhhh.eee......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh.....hhhhhhhhhhhhh......hhhhhhhhhhhhh.eeeeee.hhh.....eeee.........eeeeee.......eee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ksl E   79 RLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSIRRVRGDNYAALRATLFQAMSQAVGLPPWLQDPELMLLPEKLISKYNWIKQWKLEDLVDKIKESLTLLRKKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLMLNRAIELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYNTEEFITVYPTDPPKDWPVVTLIAEDDRHYNIPVRVCE  348
                                    88        98       108       118       128       138       148       158       168    || 186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346  
                                                                                                                        173|                                                                                                                                                                      
                                                                                                                         182                                                                                                                                                                      


Chain F from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                       
               SCOP domains d4kslf1 F:0-76 Ubiquitin                                                     d4kslf2 F:1001-1073 Ubiquitin                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....eeeeee....hhhhhhhhhhhhhh.hhhhh.eee..ee......hhhhh.....eeee.......eeeeeee....eeeeee....hhhhhhhhhhhhhh.hhh.eeeee..ee................eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4ksl F    0 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 1073
                                     9        19        29        39        49        59        69      1003      1013      1023      1033      1043      1053      1063      1073
                                                                                                       76|                                                                        
                                                                                                      1001                                                                        


Chain G from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eehhhhhhhhh...hhhhhhhhhhhhhhhhhh.eee......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhh......hhhhhhhhhhhhh......hhhhhhhhhhhhh.eeeeee.hhh.....eeee.........eeeeee.......eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ksl G   79 RLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSIRRVRGDNYAALRATLFQAMSQAVGLPPWLQDPELMLLPEKLISKYNWIKQWKLDLVDKIKESLTLLRKKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLMLNRAIELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYNTEEFITVYPTDPPKDWPVVTLIAEDDRHYNIPVRVCE  348
                                    88        98       108       118       128       138       148       158       168    || 187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347 
                                                                                                                        173|                                                                                                                                                                     
                                                                                                                         183                                                                                                                                                                     


Chain H from PDB  Type:PROTEIN  Length:149
                                                                                                                                                                                      
               SCOP domains d4kslh1 H:1-76 Ubiquitin                                                    d4kslh2 H:1001-1073 Ubiquitin                                             SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhhhh.eee..ee................eeee.......eeeeeee....eeeeee....hhhhhhhhhhhhhh.hhh.eeeee..ee................eeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ksl H    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 1073
                                    10        20        30        40        50        60        70     |1004      1014      1024      1034      1044      1054      1064         
                                                                                                      76|                                                                        
                                                                                                     1001                                                                        


Chain I from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eehhhhhhhhh...hhhhhhhhhhhhhhhhhh.eee......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh.....hhhhhhhhhhhhh......hhhhhhhhhhhhh.eeeeee.hhh.....eeee.........eeeeee.......eee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ksl I   79 RLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSIRRVRGDNYAALRATLFQAMSQAVGLPPWLQDPELMLLPEKLISKYNWIKQWKLEDLVDKIKESLTLLRKKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLMLNRAIELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYNTEEFITVYPTDPPKDWPVVTLIAEDDRHYNIPVRVCE  348
                                    88        98       108       118       128       138       148       158       168    || 186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346  
                                                                                                                        173|                                                                                                                                                                      
                                                                                                                         182                                                                                                                                                                      


Chain J from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                       
               SCOP domains d4kslj1 J:0-76 Ubiquitin                                                     d4kslj2 J:1001-1073 Ubiquitin                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....eeeeee....hhhhhhhhhhhhhh.hhhhh.eee..ee......hhhhh.....eeee.......eeeeeee....eeeeee....hhhhhhhhhhhhhh.hhh.eeeee..ee................eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4ksl J    0 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 1073
                                     9        19        29        39        49        59        69      1003      1013      1023      1033      1043      1053      1063      1073
                                                                                                       76|                                                                        
                                                                                                      1001                                                                        


Chain K from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eehhhhhhhhh...hhhhhhhhhhhhhhhhhh.eee......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhh......hhhhhhhhhhhhh......hhhhhhhhhhhhh.eeeeee.hhh.....eeee.........eeeeee.......eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4ksl K   79 RLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSIRRVRGDNYAALRATLFQAMSQAVGLPPWLQDPELMLLPEKLISKYNWIKQWKLGLKFDGKNEDLVDKIKESLTLLRKKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLMLNRAIELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYNTEEFITVYPTDPPKDWPVVTLIAEDDRHYNIPVRVCE  348
                                    88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348


Chain L from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                       
               SCOP domains d4ksll1 L:0-76 Ubiquitin                                                     d4ksll2 L:1001-1073 Ubiquitin                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....eeeeee....hhhhhhhhhhhhhh.hhhhh.eee..ee......hhhhh.....eeee.......eeeeeee....eeeeee....hhhhhhhhhhhhhh.hhh.eeeee..ee................eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4ksl L    0 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 1073
                                     9        19        29        39        49        59        69      1003      1013      1023      1033      1043      1053      1063      1073
                                                                                                       76|                                                                        
                                                                                                      1001                                                                        


Chain M from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                     
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eehhhhhhhhh...hhhhhhhhhhhhhhhhhh.eee......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh.....hhhhhhhhhhhhh......hhhhhhhhhhhhh.eeeeee.........eeee.........eeeeee.......eee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ksl M   79 RLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSIRRVRGDNYAALRATLFQAMSQAVGLPPWLQDPELMLLPEKLISKYNWIKQWKLGVDKIKESLTLLRKKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLMLNRAIELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYNTEEFITVYPTDPPKDWPVVTLIAEDDRHYNIPVRVCE  348
                                    88        98       108       118       128       138       148       158       168     ||188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348
                                                                                                                         174|                                                                                                                                                                   
                                                                                                                          185                                                                                                                                                                   


Chain N from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                       
               SCOP domains d4ksln1 N:0-76 Ubiquitin                                                     d4ksln2 N:1001-1073 Ubiquitin                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....eeeeee....hhhhhhhhhhhhhh.hhhhh.eee..ee......hhhhh.....eeee........eeeee.....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee................eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4ksl N    0 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 1073
                                     9        19        29        39        49        59        69      1003      1013      1023      1033      1043      1053      1063      1073
                                                                                                       76|                                                                        
                                                                                                      1001                                                                        


Chain O from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eehhhhhhhhh...hhhhhhhhhhhhhhhhhh.eee......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh.....hhhhhhhhhhhhh......hhhhhhhhhhhhh.eeeeee.hhh.....eeee.........eeeeee.......eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4ksl O   79 RLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSIRRVRGDNYAALRATLFQAMSQAVGLPPWLQDPELMLLPEKLISKYNWIKQWKLGLKFDGKNEDLVDKIKESLTLLRKKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLMLNRAIELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYNTEEFITVYPTDPPKDWPVVTLIAEDDRHYNIPVRVCE  348
                                    88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348


Chain P from PDB  Type:PROTEIN  Length:149
                                                                                                                                                                                      
               SCOP domains d4kslp1 P:1-76 Ubiquitin                                                    d4kslp2 P:1001-1073 Ubiquitin                                             SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhhhh.eee..ee......hhhhh.....eeee.......eeeeee.....eeeeee....hhhhhhhhhhhhhh.hhh.eeeee..ee................eeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ksl P    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 1073
                                    10        20        30        40        50        60        70     |1004      1014      1024      1034      1044      1054      1064         
                                                                                                      76|                                                                        
                                                                                                     1001                                                                        


Chain Q from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eehhhhhhhhh...hhhhhhhhhhhhhhhhhh.eee......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh.....hhhhhhhhhhhhh.....eehhhhhhhhhhhh.eeeeee.hhh.....eeee.........eeeeee.......eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ksl Q   79 RLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSIRRVRGDNYAALRATLFQAMSQAVGLPPWLQDPELMLLPEKLISKYNWIKQWKLDLVDKIKESLTLLRKKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLMLNRAIELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYNTEEFITVYPTDPPKDWPVVTLIAEDDRHYNIPVRVCE  348
                                    88        98       108       118       128       138       148       158       168    || 187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347 
                                                                                                                        173|                                                                                                                                                                     
                                                                                                                         183                                                                                                                                                                     


Chain R from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                       
               SCOP domains d4kslr1 R:0-76 Ubiquitin                                                     d4kslr2 R:1001-1073 Ubiquitin                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....eeeeee....hhhhhhhhhhhhhh.hhhhh.eee..ee................eeee....ee..eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee................eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4ksl R    0 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 1073
                                     9        19        29        39        49        59        69      1003      1013      1023      1033      1043      1053      1063      1073
                                                                                                       76|                                                                        
                                                                                                      1001                                                                        


Chain S from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eehhhhhhhhh...hhhhhhhhhhhhhhhhhh.eee......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhh......hhhhhhhhhhhhh......hhhhhhhhhhhhh.eeeeee.hhh.....eeee.........eeeeee.......eee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ksl S   79 RLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSIRRVRGDNYAALRATLFQAMSQAVGLPPWLQDPELMLLPEKLISKYNWIKQWKLGEDLVDKIKESLTLLRKKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLMLNRAIELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYNTEEFITVYPTDPPKDWPVVTLIAEDDRHYNIPVRVCE  348
                                    88        98       108       118       128       138       148       158       168     ||185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345   
                                                                                                                         174|                                                                                                                                                                      
                                                                                                                          182                                                                                                                                                                      


Chain T from PDB  Type:PROTEIN  Length:149
                                                                                                                                                                                      
               SCOP domains d4kslt1 T:1-76 Ubiquitin                                                    d4kslt2 T:1001-1073 Ubiquitin                                             SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhhhh.eee..ee......hhhhh.....eeee........eeeee.....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee................eeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ksl T    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 1073
                                    10        20        30        40        50        60        70     |1004      1014      1024      1034      1044      1054      1064         
                                                                                                      76|                                                                        
                                                                                                     1001                                                                        


Chain U from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eehhhhhhhhh...hhhhhhhhhhhhhhhhhh.eee......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhh......hhhhhhhhhhhhh......hhhhhhhhhhhhh.eeeeee.hhh.....eeee.........eeeeee.......eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ksl U   79 RLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSIRRVRGDNYAALRATLFQAMSQAVGLPPWLQDPELMLLPEKLISKYNWIKQWKLDLVDKIKESLTLLRKKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLMLNRAIELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYNTEEFITVYPTDPPKDWPVVTLIAEDDRHYNIPVRVCE  348
                                    88        98       108       118       128       138       148       158       168    || 187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347 
                                                                                                                        173|                                                                                                                                                                     
                                                                                                                         183                                                                                                                                                                     


Chain V from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                       
               SCOP domains d4kslv1 V:0-76 Ubiquitin                                                     d4kslv2 V:1001-1073 Ubiquitin                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....eeeeee....hhhhhhhhhhhhhh.hhhhh.eee..ee......hhhhh.....eeee.......eeeeeee....eeeeee....hhhhhhhhhhhhhh.hhh.eeeee..ee................eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4ksl V    0 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 1073
                                     9        19        29        39        49        59        69      1003      1013      1023      1033      1043      1053      1063      1073
                                                                                                       76|                                                                        
                                                                                                      1001                                                                        


Chain W from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                     
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eehhhhhhhhh...hhhhhhhhhhhhhhhhhh.eee......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhh......hhhhhhhhhhhhh......hhhhhhhhhhhhh.eeeeee.hhh.....eeee.........eeeeee.......eee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ksl W   79 RLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSIRRVRGDNYAALRATLFQAMSQAVGLPPWLQDPELMLLPEKLISKYNWIKQWKLLVDKIKESLTLLRKKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLMLNRAIELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYNTEEFITVYPTDPPKDWPVVTLIAEDDRHYNIPVRVCE  348
                                    88        98       108       118       128       138       148       158       168    || 188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348
                                                                                                                        173|                                                                                                                                                                    
                                                                                                                         184                                                                                                                                                                    


Chain X from PDB  Type:PROTEIN  Length:149
                                                                                                                                                                                      
               SCOP domains d4kslx1 X:1-76 Ubiquitin                                                    d4kslx2 X:1001-1073 Ubiquitin                                             SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhhhh.eee..ee......hhhhh.....eeee.......eeeeeee....eeeeee....hhhhhhhhhhhhhh.hhh.eeeee..ee................eeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ksl X    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 1073
                                    10        20        30        40        50        60        70     |1004      1014      1024      1034      1044      1054      1064         
                                                                                                      76|                                                                        
                                                                                                     1001
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 24)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Fold: beta-Grasp (ubiquitin-like) (1032)
(-)
Superfamily: Ubiquitin-like (546)
(-)
Family: Ubiquitin-related (337)
(-)
Protein domain: Ubiquitin (162)
(-)
Human (Homo sapiens) [TaxId: 9606] (121)
1ad4kslc1C:0-76
1bd4kslc2C:1001-1073
1cd4ksld1D:1-76
1dd4ksld2D:1001-1073
1ed4kslf1F:0-76
1fd4kslf2F:1001-1073
1gd4kslh1H:1-76
1hd4kslh2H:1001-1073
1id4kslj1J:0-76
1jd4kslj2J:1001-1073
1kd4ksll1L:0-76
1ld4ksll2L:1001-1073
1md4ksln1N:0-76
1nd4ksln2N:1001-1073
1od4kslp1P:1-76
1pd4kslp2P:1001-1073
1qd4kslr1R:0-76
1rd4kslr2R:1001-1073
1sd4kslt1T:1-76
1td4kslt2T:1001-1073
1ud4kslv1V:0-76
1vd4kslv2V:1001-1073
1wd4kslx1X:1-76
1xd4kslx2X:1001-1073

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KSL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KSL)

(-) Gene Ontology  (96, 102)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OTUL_HUMAN | Q96BN8: 3znv 3znx 3znz 4ksj 4ksk 4oyk 4p0b
        UBC_HUMAN | P0CG48: 1c3t 1cmx 1d3z 1f9j 1fxt 1g6j 1gjz 1nbf 1ogw 1q5w 1s1q 1sif 1tbe 1ubi 1ubq 1ud7 1uzx 1xd3 1xqq 1yx5 1yx6 1zgu 1zo6 2ayo 2bgf 2den 2fuh 2g45 2gbj 2gbk 2gbm 2gbn 2gbr 2gmi 2hth 2ibi 2j7q 2jf5 2jri 2jy6 2jzz 2k25 2k6d 2k8b 2k8c 2kdf 2khw 2kjh 2klg 2kn5 2kox 2ktf 2kwu 2kwv 2kx0 2l0f 2l0t 2l3z 2ld9 2lvo 2lvp 2lvq 2lz6 2mbo 2mbq 2mcn 2mi8 2mj5 2mor 2mre 2mws 2n2k 2nr2 2o6v 2ojr 2pe9 2pea 2rr9 2rsu 2ru6 2w9n 2wdt 2xew 2xk5 2y5b 2z59 2zcb 2zvn 2zvo 3a33 3alb 3aul 3b08 3b0a 3by4 3c0r 3dvg 3dvn 3eec 3efu 3ehv 3h7p 3h7s 3hm3 3i3t 3ifw 3ihp 3jsv 3jvz 3jw0 3k9o 3k9p 3kvf 3kw5 3ldz 3mhs 3mtn 3n30 3n32 3n3k 3nhe 3nob 3ns8 3o65 3ofi 3oj3 3oj4 3ons 3phd 3prm 3pt2 3ptf 3q3f 3rul 3tmp 3u30 3ugb 3v6c 3v6e 3vfk 3vuw 3vux 3vuy 3wxe 3wxf 3zlz 3znh 3zni 3znz 4ap4 4auq 4bos 4boz 4bvu 4ddg 4ddi 4dhj 4dhz 4fjv 4hk2 4hxd 4i6l 4i6n 4ig7 4ium 4jqw 4k1r 4k7s 4k7u 4k7w 4ksk 4lcd 4ldt 4mdk 4mm3 4msm 4msq 4nqk 4un2 4v3k 4v3l 4wzp 4xok 4xol 4zqs 5a5b 5af4 5af5 5af6 5ait 5aiu 5b83 5c7j 5c7m 5e6j 5h07 5nl4 5nlf 5nli 5nmc

(-) Related Entries Specified in the PDB File

4ksj 4ksk