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(-) Description

Title :  STRUCTURE OF HOIP PUB DOMAIN BOUND TO OTULIN PIM
 
Authors :  P. R. Elliott, D. Komander
Date :  12 Feb 14  (Deposition) - 21 May 14  (Release) - 21 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Hoip E3 Ubiquitin, Ligase, Otulin, Met1-Linked Ubiquitination (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. R. Elliott, S. V. Nielsen, P. Marco-Casanova, B. K. Fiil, K. Keusekotten, N. Mailand, S. M. Freund, M. Gyrd-Hansen, D. Komander
Molecular Basis And Regulation Of Otulin-Lubac Interaction.
Mol. Cell V. 54 335 2014
PubMed-ID: 24726323  |  Reference-DOI: 10.1016/J.MOLCEL.2014.03.018

(-) Compounds

Molecule 1 - E3 UBIQUITIN-PROTEIN LIGASE RNF31
    Chains: A, B
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: POPINB
    Expression System Strain: ROSETTA DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RNF31,ZIBRA
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HOIL-1-INTERACTING PROTEIN, HOIP, RING FINGER PROTEIN 31, ZINC IN-BETWEEN-RING-FINGER UBIQUITIN-ASSOCIATED DOMAIN PROTEIN, HOIL-1-INTERACTING PROTEIN, HOIP, RING FINGER PROTEIN 31, ZINC IN- BETWEEN-RING-FINGER UBIQUITIN-ASSOCIATED DOMAIN PROTEIN
 
Molecule 2 - UBIQUITIN THIOESTERASE OTULIN
    Chains: C, D
    EC Number: 3.4.19.12
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DEUBIQUITINATING ENZYME OTULIN, OTU DOMAIN-CONTAINING DEUBIQUITINASE WITH LINEAR LINKAGE SPECIFICITY, UBIQUITIN THIOESTERASE GUMBY, DEUBIQUITINATING ENZYME OTULIN, OTU DOMAIN- CONTAINING DEUBIQUITINASE WITH LINEAR LINKAGE SPECIFICITY, UBIQUITIN THIOESTERASE GUMBY
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:29 , ARG A:84 , HOH A:386 , HOH A:426binding site for residue CL
2AC2SOFTWAREPHE B:29 , ARG B:84binding site for residue CL
3AC3SOFTWAREALA A:54 , ARG A:58 , ARG B:58binding site for residue CL

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:59 -B:59

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OYK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OYK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OYK)

(-) Exons   (0, 0)

(no "Exon" information available for 4OYK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.....hhhhhhhhhh...hhhhhh...hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh........eee..hhhhhhhh....hhhhhhhhhh..eee..eee........hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oyk A   7 ERAFLVAREELASALRRDSGQAFSLEQLRPLLASSLPLAARYLQLDAARLVRCNAHGEPRNYLNTLSTALNILEKYGRNLLSPQRPRYWRGVKFNNPVFRSTVDAVQGGRDVLRLYGYTEEQPDGLSFPEGQEEPDEHQVATVTLEVLLLRTELSLLLQNTHPRQQALEQLLE 179
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176   


Chain B from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh.........hhhhhhh..hhhhhh...hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh........eee..hhhhhhhhhhh.hhhhhhhhhh..eee..eee........hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oyk B   6 EERAFLVAREELASALRRDSGQAFSLEQLRPLLASSLPLAARYLQLDAARLVRCNAHGEPRNYLNTLSTALNILEKYGRNLLSPQRPRYWRGVKFNNPVFRSTVDAVQGGRDVLRLYGYTEEQPDGLSFPEGQEEPDEHQVATVTLEVLLLRTELSLLLQNTHPRQQALEQLL 178
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175   


Chain C from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .....hhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 4oyk C  53 EDMYRAADEIEKE  65
                                    62   


Chain D from PDB  Type:PROTEIN  Length:15
                                               
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 4oyk D  53 EDMYRAADEIEKEKE  67
                                    62
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OYK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OYK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OYK)

(-) Gene Ontology  (37, 42)

Asymmetric Unit(hide GO term definitions)

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  4oyk
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  OTUL_HUMAN | Q96BN8
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  RNF31_HUMAN | Q96EP0
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  3.4.19.12
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  6.3.2.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OTUL_HUMAN | Q96BN8: 3znv 3znx 3znz 4ksj 4ksk 4ksl 4p0b
        RNF31_HUMAN | Q96EP0: 2ct7 4dbg 4juy 4ljo 4ljp 4ljq 4owf 4oyj 4p09 4p0a 4p0b 5edv 5ljn

(-) Related Entries Specified in the PDB File

4oyj