4KP6 - JenaLib

Title :   CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 4B (PDE4B) IN COMPLEX WITH A [1,3,5]TRIAZINE DERIVATIVE

Authors :   R. Gewald, C. Grunwald, U. Egerland

Date :   13 May 13 (Deposition) - 10 Jul 13 (Release) - 17 Jul 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym./Biol. Unit : A

Keywords :   Pde4 Inhibitor, Phosphodiesterase, Triazine, Neutrophilia, Copd, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Gewald, C. Grunwald, U. Egerland
Discovery Of Triazines As Potent, Selective And Orally Active Pde4 Inhibitors.
Bioorg. Med. Chem. Lett. V. 23 4308 2013
PubMed-ID: 23806553 | Reference-DOI: 10.1016/J.BMCL.2013.05.099

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 22)

Sites (22, 22)

Asymmetric Unit (22, 22)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:234 , MET A:347 , ASN A:395 , THR A:407 , ILE A:410 , MET A:431 , SER A:442 , GLN A:443 , PHE A:446 , HOH A:635 , HOH A:646	BINDING SITE FOR RESIDUE 1S1 A 501
02	AC2	SOFTWARE	ASP A:275 , HOH A:612 , HOH A:613 , HOH A:709 , HOH A:712 , HOH A:726	BINDING SITE FOR RESIDUE MG A 502
03	AC3	SOFTWARE	HIS A:238 , HIS A:274 , ASP A:275 , ASP A:392 , HOH A:711 , HOH A:712	BINDING SITE FOR RESIDUE ZN A 503
04	AC4	SOFTWARE	THR A:208 , PHE A:209 , ASN A:325 , LEU A:326 , GLN A:330 , EDO A:521	BINDING SITE FOR RESIDUE EDO A 504
05	AC5	SOFTWARE	ARG A:210 , ILE A:211 , SER A:212 , THR A:215 , ASP A:321 , ILE A:322 , MET A:324 , ASN A:325 , EDO A:514 , HOH A:605	BINDING SITE FOR RESIDUE EDO A 505
06	AC6	SOFTWARE	ASN A:283 , ASP A:299 , SER A:301 , VAL A:302 , ASP A:346 , SER A:348 , EDO A:522	BINDING SITE FOR RESIDUE EDO A 506
07	AC7	SOFTWARE	GLY A:177 , LEU A:178 , ILE A:180 , ASP A:241 , LYS A:398 , LEU A:402 , TRP A:406 , HOH A:611	BINDING SITE FOR RESIDUE EDO A 507
08	AC8	SOFTWARE	SER A:251 , PRO A:253 , ASP A:256 , HOH A:669	BINDING SITE FOR RESIDUE EDO A 508
09	AC9	SOFTWARE	LEU A:249 , THR A:252 , TRP A:458 , ASP A:465	BINDING SITE FOR RESIDUE EDO A 509
10	BC1	SOFTWARE	ASP A:340 , LYS A:349 , ARG A:385	BINDING SITE FOR RESIDUE EDO A 510
11	BC2	SOFTWARE	TYR A:297 , HIS A:306 , ALA A:309	BINDING SITE FOR RESIDUE EDO A 511
12	BC3	SOFTWARE	HIS A:234 , GLY A:280 , GLU A:413 , PHE A:414 , GLN A:417 , EDO A:518 , HOH A:625	BINDING SITE FOR RESIDUE EDO A 512
13	BC4	SOFTWARE	SER A:212 , HOH A:647 , HOH A:671	BINDING SITE FOR RESIDUE EDO A 513
14	BC5	SOFTWARE	SER A:212 , ASP A:214 , THR A:215 , HIS A:319 , EDO A:505	BINDING SITE FOR RESIDUE EDO A 514
15	BC6	SOFTWARE	ARG A:331 , ARG A:335 , EDO A:516	BINDING SITE FOR RESIDUE EDO A 515
16	BC7	SOFTWARE	ASP A:321 , ARG A:331 , ARG A:335 , EDO A:515 , HOH A:653	BINDING SITE FOR RESIDUE EDO A 516
17	BC8	SOFTWARE	ASN A:174 , GLU A:202 , HIS A:247 , SER A:251	BINDING SITE FOR RESIDUE EDO A 517
18	BC9	SOFTWARE	SER A:282 , PRO A:430 , CYS A:432 , EDO A:512 , HOH A:693 , HOH A:710	BINDING SITE FOR RESIDUE EDO A 518
19	CC1	SOFTWARE	LEU A:250 , LEU A:255 , ALA A:257 , VAL A:258 , PHE A:259	BINDING SITE FOR RESIDUE EDO A 519
20	CC2	SOFTWARE	ARG A:203 , ASP A:204 , LEU A:205 , THR A:208 , ASP A:261 , ILE A:264 , HOH A:609	BINDING SITE FOR RESIDUE EDO A 520
21	CC3	SOFTWARE	THR A:208 , ASP A:261 , GLN A:330 , EDO A:504 , HOH A:746	BINDING SITE FOR RESIDUE EDO A 521
22	CC4	SOFTWARE	GLU A:300 , ASP A:346 , LYS A:349 , EDO A:506	BINDING SITE FOR RESIDUE EDO A 522

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4kp6a_ A: Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhh.......hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.......hhhhhhhh.hhhhhhh...hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4kp6 A 162 NEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEEHCDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEEFFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTLEDNRNWYQSMIP 485
                                   171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (33, 33)

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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Gln A:463 - Pro A:464	[ RasMol ]

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	4kp6
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	3.1.4.17
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