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(-) Description

Title :  CRYSTAL STRUCTURE OF D196N MUTANT OF MONOGLYCERIDE LIPASE FROM BACILLUS SP. H257 IN SPACE GROUP P212121
 
Authors :  S. Rengachari, P. Aschauer, K. Gruber, I. Dreveny, M. Oberer
Date :  25 Apr 13  (Deposition) - 18 Sep 13  (Release) - 20 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Keywords :  Alpha/Beta Hydrolase, Monoglyceride Lipase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Rengachari, P. Aschauer, M. Schittmayer, N. Mayer, K. Gruber, R. Breinbauer, R. Birner-Gruenberger, I. Dreveny, M. Oberer
Conformational Plasticity And Ligand Binding Of Bacterial Monoacylglycerol Lipase.
J. Biol. Chem. V. 288 31093 2013
PubMed-ID: 24014019  |  Reference-DOI: 10.1074/JBC.M113.491415

(-) Compounds

Molecule 1 - THERMOSTABLE MONOACYLGLYCEROL LIPASE
    Chains: A, B, C, D, E, F
    EC Number: 3.1.1.23
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PET28A(+)
    Mutation: YES
    Organism Scientific: BACILLUS SP.
    Organism Taxid: 129908
    Strain: H-257
    Synonym: MGLP

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A     
Biological Unit 2 (1x):  B    
Biological Unit 3 (1x):   C   
Biological Unit 4 (1x):    D  
Biological Unit 5 (1x):     E 
Biological Unit 6 (1x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 24)

Asymmetric Unit (1, 24)
No.NameCountTypeFull Name
1MPD24Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1MPD6Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1MPD4Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1MPD4Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 4 (1, 3)
No.NameCountTypeFull Name
1MPD3Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 5 (1, 4)
No.NameCountTypeFull Name
1MPD4Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 6 (1, 3)
No.NameCountTypeFull Name
1MPD3Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE A:29 , THR A:30 , LEU A:96 , GLU A:156 , ALA A:158 , VAL A:227 , HOH A:419 , HOH A:431BINDING SITE FOR RESIDUE MPD A 301
02AC2SOFTWARESER A:97 , VAL A:198 , HOH A:570 , MPD B:303BINDING SITE FOR RESIDUE MPD A 302
03AC3SOFTWAREGLU A:239 , ARG A:240 , GLU A:243 , LYS C:247BINDING SITE FOR RESIDUE MPD A 303
04AC4SOFTWAREASP A:231 , TYR A:232 , PRO A:235 , HOH A:462BINDING SITE FOR RESIDUE MPD A 304
05AC5SOFTWAREVAL A:21 , GLY A:47 , TYR A:48 , ALA A:249BINDING SITE FOR RESIDUE MPD A 305
06AC6SOFTWARELEU A:8 , LEU A:157 , ALA A:158 , TYR A:159 , GLU A:160BINDING SITE FOR RESIDUE MPD A 306
07AC7SOFTWAREGLY B:28 , PHE B:29 , THR B:30 , LEU B:96 , GLU B:156 , VAL B:227 , MPD B:302 , HOH B:401 , HOH B:411BINDING SITE FOR RESIDUE MPD B 301
08AC8SOFTWAREPHE B:29 , SER B:97 , MPD B:301 , HOH B:402BINDING SITE FOR RESIDUE MPD B 302
09AC9SOFTWAREALA A:127 , MPD A:302 , ASP B:143 , MPD B:304 , HOH B:437BINDING SITE FOR RESIDUE MPD B 303
10BC1SOFTWAREASP B:143 , ILE B:145 , MPD B:303 , HOH B:583BINDING SITE FOR RESIDUE MPD B 304
11BC2SOFTWAREPHE C:29 , SER C:97 , MPD C:302 , HOH C:401BINDING SITE FOR RESIDUE MPD C 301
12BC3SOFTWARETHR C:30 , LEU C:96 , SER C:97 , GLU C:156 , ALA C:158 , MPD C:301 , HOH C:401 , HOH C:482BINDING SITE FOR RESIDUE MPD C 302
13BC4SOFTWAREGLN C:86 , ASP C:231 , GLN C:234 , PRO C:235BINDING SITE FOR RESIDUE MPD C 303
14BC5SOFTWAREGLY C:47 , TYR C:48 , HOH C:519BINDING SITE FOR RESIDUE MPD C 304
15BC6SOFTWAREPHE D:29 , GLY D:31 , GLU D:156 , HIS D:226 , MPD D:302 , HOH D:493BINDING SITE FOR RESIDUE MPD D 301
16BC7SOFTWARESER D:97 , ILE D:125 , LEU D:170 , VAL D:198 , MPD D:301 , HOH D:517BINDING SITE FOR RESIDUE MPD D 302
17BC8SOFTWAREASN D:151 , ASP D:231 , TYR D:232BINDING SITE FOR RESIDUE MPD D 303
18BC9SOFTWAREPHE E:29 , SER E:97 , ILE E:125 , LEU E:167 , LEU E:170 , VAL E:198 , MPD E:302 , HOH E:402BINDING SITE FOR RESIDUE MPD E 301
19CC1SOFTWAREPHE E:29 , THR E:30 , LEU E:96 , GLU E:156 , VAL E:227 , MPD E:301 , HOH E:552BINDING SITE FOR RESIDUE MPD E 302
20CC2SOFTWAREVAL E:21 , ALA E:46 , GLY E:47 , TYR E:48 , ALA E:249 , HOH E:407 , ALA F:46 , TYR F:48 , HOH F:402 , HOH F:421BINDING SITE FOR RESIDUE MPD E 303
21CC3SOFTWAREASN E:151 , ASP E:231 , TYR E:232 , GLN E:234BINDING SITE FOR RESIDUE MPD E 304
22CC4SOFTWAREPHE F:29 , SER F:97 , VAL F:198 , HOH F:462BINDING SITE FOR RESIDUE MPD F 301
23CC5SOFTWAREPHE F:29 , GLU F:156 , ALA F:158 , VAL F:227 , HOH F:463 , HOH F:504BINDING SITE FOR RESIDUE MPD F 302
24CC6SOFTWAREASN F:151 , LEU F:230 , ASP F:231 , TYR F:232 , GLN F:234BINDING SITE FOR RESIDUE MPD F 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KEA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KEA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KEA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KEA)

(-) Exons   (0, 0)

(no "Exon" information available for 4KEA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains d4keaa_ A: automated matches                                                                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eee....eeeeee.....hhhhhhhhhhhhhhh..eeee........hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhh....eeeee.....hhhhhhhhhh......eee.................eeehhhhhhhhhhhhhhhhhhhhh...eeeeee........hhhhhhhhhh...eeeeeee.....hhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kea A   2 SEQYPVLSGAEPFYAENGPVGVLLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDWVASVEEGYGWLKQRCQTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSDLKNPDVKELAYEKTPTASLLQLARLMAQTKAKLDRIVCPALIFVSDENHVVPPGNADIIFQGISSTEKEIVRLRNSYHVATLDYDQPMIIERSLEFFAKHA 249
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241        


Chain B from PDB  Type:PROTEIN  Length:243
                                                                                                                                                                                                                                                                                   
               SCOP domains d4keab_ B: automated matches                                                                                                                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eee....eeeeee.....hhhhhhhhhhhhhhh..eeee........hhhhhhh.hhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhh....eeeee.....hhhhhh....eee.................eeehhhhhhhhhhhhhhhhhhhhh...eeeeee........hhhhhhhhhh....eeeeee.....hhhhh.hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kea B   2 SEQYPVLSGAEPFYAENGPVGVLLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDWVASVEEGYGWLKQRCQTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIAAELPRYLDSIGSDLKNPDVKELAYEKTPTASLLQLARLMAQTKAKLDRIVCPALIFVSDENHVVPPGNADIIFQGISSTEKEIVRLRNSYHVATLDYDQPMIIERSLEFFAKHAG 250
                                    11        21        31        41        51        61        71        81        91       101       111       121       137       147       157       167       177       187       197       207       217       227       237       247   
                                                                                                                                                          130|                                                                                                                 
                                                                                                                                                           137                                                                                                                 


Chain C from PDB  Type:PROTEIN  Length:245
                                                                                                                                                                                                                                                                                     
               SCOP domains d4keac_ C: automated matches                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eee....eeeeee.....hhhhhhhhhhhhhhh..eeee........hhhhhhh.hhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhh......eeeee.....hhhhhh.......eee.................eeehhhhhhhhhhhhhhhhhhhhh...eeeeee........hhhhhhhhhh...eeeeeee.....hhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kea C   2 SEQYPVLSGAEPFYAENGPVGVLLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDWVASVEEGYGWLKQRCQTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIAAGMGELPRYLDSIGSDLKNPDVKELAYEKTPTASLLQLARLMAQTKAKLDRIVCPALIFVSDENHVVPPGNADIIFQGISSTEKEIVRLRNSYHVATLDYDQPMIIERSLEFFAKHA 249
                                    11        21        31        41        51        61        71        81        91       101       111       121       131||     144       154       164       174       184       194       204       214       224       234       244     
                                                                                                                                                            132|                                                                                                                 
                                                                                                                                                             136                                                                                                                 


Chain D from PDB  Type:PROTEIN  Length:244
                                                                                                                                                                                                                                                                                    
               SCOP domains d4kead_ D: automated matches                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eee....eeeeee.....hhhhhhhhhhhhhhh..eeee........hhhhhhh.hhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhh....eeeee.....hhhhhh......eee.................eeehhhhhhhhhhhhhhhhhhhhh...eeeeee........hhhhhhhhhh....eeeeee.....hhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kea D   2 SEQYPVLSGAEPFYAENGPVGVLLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDWVASVEEGYGWLKQRCQTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIAAGGELPRYLDSIGSDLKNPDVKELAYEKTPTASLLQLARLMAQTKAKLDRIVCPALIFVSDENHVVPPGNADIIFQGISSTEKEIVRLRNSYHVATLDYDQPMIIERSLEFFAKHA 249
                                    11        21        31        41        51        61        71        81        91       101       111       121       135       145       155       165       175       185       195       205       215       225       235       245    
                                                                                                                                                          130|                                                                                                                  
                                                                                                                                                           135                                                                                                                  


Chain E from PDB  Type:PROTEIN  Length:242
                                                                                                                                                                                                                                                                                  
               SCOP domains d4keae_ E: automated matches                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eee....eeeeee.....hhhhhhhhhhhhhhh..eeee........hhhhhhh.hhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhh....eeeee.....hhhhhh...eee.................eeehhhhhhhhhhhhhhhhhhhhh...eeeeee........hhhhhhhhhh....eeeeee.....hhhhh.hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kea E   2 SEQYPVLSGAEPFYAENGPVGVLLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDWVASVEEGYGWLKQRCQTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIAALPRYLDSIGSDLKNPDVKELAYEKTPTASLLQLARLMAQTKAKLDRIVCPALIFVSDENHVVPPGNADIIFQGISSTEKEIVRLRNSYHVATLDYDQPMIIERSLEFFAKHAG 250
                                    11        21        31        41        51        61        71        81        91       101       111       121       138       148       158       168       178       188       198       208       218       228       238       248  
                                                                                                                                                          130|                                                                                                                
                                                                                                                                                           138                                                                                                                


Chain F from PDB  Type:PROTEIN  Length:240
                                                                                                                                                                                                                                                                                
               SCOP domains d4keaf_ F: automated matches                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........eee....eeeeee.....hhhhhhhhhhhhhhh..eeee........hhhhhhh.hhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhh......eeeee.............eee.................eeehhhhhhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhh....eeeeee.....hhhhh.hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4kea F   3 EQYPVLSGAEPFYAENGPVGVLLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDWVASVEEGYGWLKQRCQTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIALPRYLDSIGSDLKNPDVKELAYEKTPTASLLQLARLMAQTKAKLDRIVCPALIFVSDENHVVPPGNADIIFQGISSTEKEIVRLRNSYHVATLDYDQPMIIERSLEFFAKHAG 250
                                    12        22        32        42        52        62        72        82        92       102       112       122      |140       150       160       170       180       190       200       210       220       230       240       250
                                                                                                                                                        129|                                                                                                                
                                                                                                                                                         138
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KEA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KEA)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        MGLP_BAC25 | P82597: 3rli 3rm3 4ke6 4ke7 4ke8 4ke9 4lhe

(-) Related Entries Specified in the PDB File

4ke6 4ke7 4ke8 4ke9