4JS0 - JenaLib

Title :   COMPLEX OF CDC42 WITH THE CRIB-PR DOMAIN OF IRSP53

Authors :   D. J. Kast, R. Dominguez

Date :   22 Mar 13 (Deposition) - 05 Mar 14 (Release) - 30 Apr 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym./Biol. Unit : A,B

Keywords :   Gtpase Binding Domain, Crib Domain, Cytoskeleton Regulation, Signaling Protein-Signaling Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. J. Kast, C. Yang, A. Disanza, M. Boczkowska, Y. Madasu, G. Scita, T. Svitkina, R. Dominguez
Mechanism Of Irsp53 Inhibition And Combinatorial Activation By Cdc42 And Downstream Effectors.
Nat. Struct. Mol. Biol. V. 21 413 2014
PubMed-ID: 24584464 | Reference-DOI: 10.1038/NSMB.2781

Compounds

Molecule 1 - CELL DIVISION CONTROL PROTEIN 42 HOMOLOG
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PTYB11
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	CDC42
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	G25K GTP-BINDING PROTEIN

Molecule 2 - BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN 2
	Chains	:	B
	Engineered	:	YES
	Fragment	:	CRIB-PR DOMAIN
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	BAI-ASSOCIATED PROTEIN 2, BAI1-ASSOCIATED PROTEIN 2, PROTEIN BAP2, FAS LIGAND-ASSOCIATED FACTOR 3, FLAF3, INSULIN RECEPTOR SUBSTRATE P53/P58, IRS-58, IRSP53/58, INSULIN RECEPTOR SUBSTRATE PROTEIN OF 53 KDA, IRSP53, INSULIN RECEPTOR SUBSTRATE P53
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 6)

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	VAL A:12 , ALA A:13 , VAL A:14 , GLY A:15 , LYS A:16 , THR A:17 , CYS A:18 , PHE A:28 , TYR A:32 , PRO A:34 , THR A:35 , GLY A:60 , GLN A:116 , ASP A:118 , LEU A:119 , LYS A:128 , SER A:158 , ALA A:159 , LEU A:160 , MG A:202 , HOH A:302 , HOH A:304 , HOH A:309 , HOH A:333 , HOH A:338 , HOH A:355 , HOH A:364 , HOH A:373	BINDING SITE FOR RESIDUE GNP A 201
2	AC2	SOFTWARE	THR A:17 , THR A:35 , GNP A:201 , HOH A:302 , HOH A:304	BINDING SITE FOR RESIDUE MG A 202
3	AC3	SOFTWARE	HOH A:341 , HOH A:346 , HOH A:372 , HOH A:384 , HOH A:385 , HOH A:414	BINDING SITE FOR RESIDUE MG A 203
4	AC4	SOFTWARE	VAL A:85 , LYS A:128 , HOH A:364 , HOH A:375	BINDING SITE FOR RESIDUE PE4 A 204
5	AC5	SOFTWARE	PHE A:90 , GLU A:91 , LYS A:94 , ASP A:148 , HOH A:371 , HOH A:381 , HOH A:382	BINDING SITE FOR RESIDUE PE4 A 205
6	AC6	SOFTWARE	THR A:24 , ASN A:26 , PRO B:270 , PRO B:272	BINDING SITE FOR RESIDUE PE4 A 206

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee....hhhhhhhhhhhh..........eeeeeeeeee..eeeeeeeeee..hhhhh.hhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhhh.....hhhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4js0 A   1 MQTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

Chain B from PDB  Type:PROTEIN  Length:29
                                                             
               SCOP domains ----------------------------- SCOP domains
               CATH domains ----------------------------- CATH domains
               Pfam domains ----------------------------- Pfam domains
         Sec.struct. author .................hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------- SAPs(SNPs)
                    PROSITE ----------------------------- PROSITE
                 Transcript ----------------------------- Transcript
                 4js0 B 263 SNLVISDPIPGAKPLPVPPELAPFVGRMS 291
                                   272       282

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

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Pfam Domains (0, 0)

Gene Ontology (130, 146)

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	Cis Peptide Bonds
		Gly B:288 - Arg B:289	[ RasMol ]

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Description