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(-) Description

Title :  COMPLEX STRUCTURE OF AML1-ETO NHR2 DOMAIN WITH HEB FRAGMENT
 
Authors :  Z. Wang, D. J. Patel
Date :  18 Mar 13  (Deposition) - 26 Jun 13  (Release) - 28 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.91
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,C,E,G  (1x)
Biol. Unit 2:  B,D,F,H  (1x)
Keywords :  Leukemia; Aml1-Eto; Heb; Nhr2 Domain, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. J. Sun, Z. Wang, L. Wang, Y. Jiang, N. Kost, T. D. Soong, W. Y. Chen, Z. Tang, T. Nakadai, O. Elemento, W. Fischle, A. Melnick, D. J. Patel, S. D. Nimer, R. G. Roeder
A Stable Transcription Factor Complex Nucleated By Oligomeric Aml1-Eto Controls Leukaemogenesis.
Nature V. 500 93 2013
PubMed-ID: 23812588  |  Reference-DOI: 10.1038/NATURE12287

(-) Compounds

Molecule 1 - PROTEIN CBFA2T1
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: NHR2 DOMAIN OF AML1-ETO (UNP RESIDUES 338-400)
    Gene: RUNX1T1, AML1T1, CBFA2T1, CDR, ETO, MTG8, ZMYND2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CYCLIN-D-RELATED PROTEIN, EIGHT TWENTY ONE PROTEIN, PROTEIN ETO, PROTEIN MTG8, ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 2
 
Molecule 2 - TRANSCRIPTION FACTOR 12
    Chains: E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: A FRAGMENT OF HEB (UNP RESIDUES 177-200)
    Gene: TCF12, BHLHB20, HEB, HTF4
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TCF-12, CLASS B BASIC HELIX-LOOP-HELIX PROTEIN 20, BHLHB20, DNA-BINDING PROTEIN HTF4, E-BOX-BINDING PROTEIN, TRANSCRIPTION FACTOR HTF-4

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A C E G 
Biological Unit 2 (1x):  B D F H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4JOL)

(-) Sites  (0, 0)

(no "Site" information available for 4JOL)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JOL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JOL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JOL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JOL)

(-) Exons   (0, 0)

(no "Exon" information available for 4JOL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:60
                                                                                            
               SCOP domains ------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------ Transcript
                 4jol A 489 IDHRLTDREWAEEWKHLDHLLNCIMDMVEKTRRSLTVLRRCQEADREELNYWIRRYSDAE 548
                                   498       508       518       528       538       548


Chain B from PDB  Type:PROTEIN  Length:60
                                                                                            
               SCOP domains ------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------ Transcript
                 4jol B 489 IDHRLTDREWAEEWKHLDHLLNCIMDMVEKTRRSLTVLRRCQEADREELNYWIRRYSDAE 548
                                   498       508       518       528       538       548


Chain C from PDB  Type:PROTEIN  Length:60
                                                                                            
               SCOP domains ------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------ Transcript
                 4jol C 489 IDHRLTDREWAEEWKHLDHLLNCIMDMVEKTRRSLTVLRRCQEADREELNYWIRRYSDAE 548
                                   498       508       518       528       538       548


Chain D from PDB  Type:PROTEIN  Length:60
                                                                                            
               SCOP domains ------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------ Transcript
                 4jol D 489 IDHRLTDREWAEEWKHLDHLLNCIMDMVEKTRRSLTVLRRCQEADREELNYWIRRYSDAE 548
                                   498       508       518       528       538       548


Chain E from PDB  Type:PROTEIN  Length:11
                                           
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author ........... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 4jol E 186 VPPGLPSSVYA 196
                                   195 


Chain F from PDB  Type:PROTEIN  Length:11
                                           
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author ........... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 4jol F 186 VPPGLPSSVYA 196
                                   195 


Chain G from PDB  Type:PROTEIN  Length:11
                                           
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author ........... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 4jol G 186 VPPGLPSSVYA 196
                                   195 


Chain H from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ............ Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 4jol H 185 KVPPGLPSSVYA 196
                                   194
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JOL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JOL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JOL)

(-) Gene Ontology  (42, 49)

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  MTG8_HUMAN | Q06455
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HTF4_HUMAN | Q99081: 2knh
        MTG8_HUMAN | Q06455: 1wq6 2dj8 2h7b 2knh 2kyg 2od1 2odd 2pp4

(-) Related Entries Specified in the PDB File

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