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(-) Description

Title :  SOLUTION STRUCTURE OF ZF-MYND DOMAIN OF PROTEIN CBFA2TI (PROTEIN MTG8)
 
Authors :  T. N. Niraula, A. Sasagawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  31 Mar 06  (Deposition) - 01 Oct 06  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Zinc Finger Mynd Domain, Protein Mtg8, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. N. Niraula, A. Sasagawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structure Of Zf-Mynd Domain Of Protein Cbfa2Ti (Protein Mtg8)
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN CBFA2T1
    Chains: A
    Engineered: YES
    Expression System: CELL FREE SYNTHESIS
    Expression System Plasmid: P050302-54
    Expression System Vector Type: PLASMID
    Fragment: ZF-MYND
    Gene: RUNX1T1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CELL-FREE PROTEIN SYNTHESIS
    Synonym: PROTEIN MTG8, PROTEIN ETO, EIGTH TWENTY ONE PROTEIN, CYCLIN D-RELATED PROTEIN, ZINC FINGER MYND DOMAIN- CONTAINING PROTEIN 2

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:18 , CYS A:21 , CYS A:38 , CYS A:42BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWARECYS A:29 , CYS A:32 , HIS A:50 , CYS A:54BINDING SITE FOR RESIDUE ZN A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2DJ8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2DJ8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2DJ8)

(-) PROSITE Motifs  (2, 1)

NMR Structure (2, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_MYND_1PS01360 Zinc finger MYND-type signature.MTG8_HUMAN515-551  1A:18-54
2ZF_MYND_2PS50865 Zinc finger MYND-type profile.MTG8_HUMAN515-551  1A:18-54

(-) Exons   (4, 4)

NMR Structure (4, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.6bENST000002658146bENSE00001297181chr8:93088364-93088193172MTG8_HUMAN1-30300--
1.11lENST0000026581411lENSE00001782570chr8:93029591-93029454138MTG8_HUMAN30-76470--
1.12nENST0000026581412nENSE00002197259chr8:93027048-93026807242MTG8_HUMAN76-156810--
1.13cENST0000026581413cENSE00001682869chr8:93023319-9302323090MTG8_HUMAN157-186300--
1.14eENST0000026581414eENSE00001706185chr8:93017525-93017344182MTG8_HUMAN187-247610--
1.17bENST0000026581417bENSE00001739575chr8:93004117-93003867251MTG8_HUMAN247-331850--
1.18bENST0000026581418bENSE00001770404chr8:92999200-9299911586MTG8_HUMAN331-359290--
1.19ENST0000026581419ENSE00001764658chr8:92998553-92998352202MTG8_HUMAN360-427681A:1-55
1.21ENST0000026581421ENSE00001658814chr8:92988201-9298813369MTG8_HUMAN427-450241A:6-72
1.22cENST0000026581422cENSE00001768415chr8:92983076-92982886191MTG8_HUMAN450-513641A:8-169
1.23hENST0000026581423hENSE00001226380chr8:92972745-929711521594MTG8_HUMAN514-604911A:17-60 (gaps)62

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:60
 aligned with MTG8_HUMAN | Q06455 from UniProtKB/Swiss-Prot  Length:604

    Alignment length:169
                                   416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566         
           MTG8_HUMAN   407 GSSSSHSRQQSPVNPDPVALDAHREFLHRPASGYVPEEIWKKAEEAVNEVKRQAMTELQKAVSEAERKAHDMITTERAKMERTVAEAKRQAAEDALAVINQQEDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQQGDTPAVSSSVTPNSG 575
               SCOP domains --------------------------------------------------------------------------------------------------d2dj8a1 A:8-54                                 ------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....--------------------------..-----------------------------------------------------------------...................ee.......ee.hhhhhhhhhhhhh.....------------------.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------------------------------------------------------------------ZF_MYND_2  PDB: A:18-54              ------------------------ PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------ZF_MYND_1  PDB: A:18-54              ------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.19  PDB: A:1-5----------------------Exon 1.22c  PDB: A:8-16 UniProt: 450-513 [INCOMPLETE]           Exon 1.23h  PDB: A:17-60 (gaps) UniProt: 514-604 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) --------------------Exon 1.21  PDB: A:6-7   ----------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2dj8 A   1 GSSGS--------------------------SG-----------------------------------------------------------------INQQEDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICSG------------------PSSG  60
                                |    -         -         - ||      -         -         -         -         -         -        |9        19        29        39        49      |  -         -     |   
                                5                          6|                                                                 8                                              56                 57   
                                                            7
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2DJ8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2DJ8)

(-) Gene Ontology  (15, 15)

NMR Structure(hide GO term definitions)
Chain A   (MTG8_HUMAN | Q06455)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0003714    transcription corepressor activity    Interacting selectively and non-covalently with a repressing transcription factor and also with the basal transcription machinery in order to stop, prevent, or reduce the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between repressive transcription factors and the basal transcription machinery.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0006091    generation of precursor metabolites and energy    The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances.
    GO:0045599    negative regulation of fat cell differentiation    Any process that stops, prevents, or reduces the frequency, rate or extent of adipocyte differentiation.
    GO:0045892    negative regulation of transcription, DNA-templated    Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0016363    nuclear matrix    The dense fibrillar network lying on the inner side of the nuclear membrane.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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  MTG8_HUMAN | Q06455
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MTG8_HUMAN | Q06455: 1wq6 2h7b 2knh 2kyg 2od1 2odd 2pp4 4jol

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2DJ8)