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(-) Description

Title :  CRYSTAL STRUCTURE OF UPA IN COMPLEX WITH ITS INHIBITOR 4-BROMOBENZYLAMINE AT PH 4.6
 
Authors :  X. Zhang, L. Jiang, B. Zhao, C. Yuan, M. Huang
Date :  15 Mar 13  (Deposition) - 19 Mar 14  (Release) - 19 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.17
Chains :  Asym./Biol. Unit :  U
Keywords :  Upa, Halogen, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Zhang, L. Jiang, B. Zhao, C. Yuan, M. Huang
Halogen Bonds In The Design Of Serine Protease Inhibitors
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UROKINASE-TYPE PLASMINOGEN ACTIVATOR
    Chains: U
    EC Number: 3.4.21.73
    Engineered: YES
    Expression System: SACCHAROMYCES CEREVISIAE
    Expression System Common: YEAST
    Expression System Plasmid: PPICZALPHA
    Expression System Strain: X33
    Expression System Taxid: 4932
    Expression System Vector Type: PLASMID
    Fragment: CATALYTIC DOMAIN
    Gene: PLAU
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: U-PLASMINOGEN ACTIVATOR, UPA

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : U

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1PGE2Ligand/IonTRIETHYLENE GLYCOL
2PZH1Ligand/Ion1-(4-BROMOPHENYL)METHANAMINE
3SO41Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS U:57 , GLN U:192 , GLY U:193 , SER U:195 , PZH U:302 , HOH U:424 , HOH U:469 , HOH U:552BINDING SITE FOR RESIDUE SO4 U 301
2AC2SOFTWAREASP U:189 , SER U:190 , CYS U:191 , GLN U:192 , SER U:195 , VAL U:213 , SER U:214 , TRP U:215 , GLY U:219 , CYS U:220 , GLY U:226 , SO4 U:301 , HOH U:591 , HOH U:592 , HOH U:593BINDING SITE FOR RESIDUE PZH U 302
3AC3SOFTWAREPHE U:132 , GLY U:133 , LEU U:162 , ILE U:163 , TYR U:171 , ASP U:185 , PRO U:185A , TRP U:186 , HOH U:519BINDING SITE FOR RESIDUE PGE U 303
4AC4SOFTWARESER U:135 , TYR U:149 , LEU U:150 , VAL U:159BINDING SITE FOR RESIDUE PGE U 304

(-) SS Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1U:42 -U:58
2U:50 -U:111
3U:136 -U:201
4U:168 -U:182
5U:191 -U:220

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly U:37B-Gly U:37C

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JNI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JNI)

(-) Exons   (0, 0)

(no "Exon" information available for 4JNI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain U from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                       
               SCOP domains d4jniu_ U: Urokinase-type plasminogen activator (LMW U-PA), catalytic domain                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....ee.hhhhh..eeeeeee.....eeeeeeeeeee..eeeehhhhh....hhh.eeeee............eeeeeeeeee....ee....ee...eeeeee.............................eeeeee...............eeeeeeeehhhhhh....hhhhh...eeeee...............eeeeee..eeeeeeeeee..........eeeee...hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4jni U   16 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTK  243
                                    25        35  ||||  41        51       60A||  |   67        77        87        97||     105     ||111       121       131       141       151       161      170A|      179      |187       197       207       217|    | 227       237      
                                                37A|||                     60A||  |                                 97A|          110A|||                                                         170A|            185A|                             217| 223A                    
                                                 37B||                      60B|  |                                  97B           110B||                                                          170B             185B                              219                         
                                                  37C|                       60C  |                                                 110C|                                                                                                                                         
                                                   37D                          62A                                                  110D
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JNI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JNI)

(-) Gene Ontology  (48, 48)

Asymmetric/Biological Unit(hide GO term definitions)

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    Gly U:37B - Gly U:37C  [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        UROK_HUMAN | P00749: 1c5w 1c5x 1c5y 1c5z 1ejn 1f5k 1f5l 1f92 1fv9 1gi7 1gi8 1gi9 1gj7 1gj8 1gj9 1gja 1gjb 1gjc 1gjd 1kdu 1lmw 1o3p 1o5a 1o5b 1o5c 1owd 1owe 1owh 1owi 1owj 1owk 1sc8 1sqa 1sqo 1sqt 1u6q 1urk 1vj9 1vja 1w0z 1w10 1w11 1w12 1w13 1w14 2fd6 2i9a 2i9b 2nwn 2o8t 2o8u 2o8w 2r2w 2vin 2vio 2vip 2viq 2viv 2viw 2vnt 3bt1 3bt2 3ig6 3kgp 3khv 3kid 3m61 3mhw 3mwi 3ox7 3oy5 3oy6 3pb1 3qn7 3u73 4dva 4dw2 4fu7 4fu8 4fu9 4fub 4fuc 4fud 4fue 4fuf 4fug 4fuh 4fui 4fuj 4gly 4h42 4jk5 4jk6 4jnl 4k24 4mnv 4mnw 4mnx 4mny 4os1 4os2 4os4 4os5 4os6 4os7 4x0w 4x1n 4x1p 4x1q 4x1r 4x1s 4xsk 4zhl 4zhm 4zkn 4zko 4zkr 4zks 5hgg

(-) Related Entries Specified in the PDB File

4jnl