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(-) Description

Title :  CRYSTAL STRUCTURE OF THE UROKINASE
 
Authors :  Y. N. Kang, J. A. Stuckey, V. Nienaber, V. Giranda
Date :  28 Jun 12  (Deposition) - 22 Aug 12  (Release) - 22 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. N. Kang, J. A. Stuckey, V. Nienaber, V. Giranda
Crystal Structure Of The Urokinase
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UROKINASE-TYPE PLASMINOGEN ACTIVATOR
    Chains: A
    EC Number: 3.4.21.73
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PLAU
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: U-PLASMINOGEN ACTIVATOR, UPA, UROKINASE-TYPE PLASMINOGEN ACTIVATOR LONG CHAIN A, UROKINASE-TYPE PLASMINOGEN ACTIVATOR SHORT CHAIN A, UROKINASE-TYPE PLASMINOGEN ACTIVATOR CHAIN B

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 12)

Asymmetric/Biological Unit (5, 12)
No.NameCountTypeFull Name
18UP1Ligand/Ion8-(3-BROMOPROPOXY)-7-METHOXYNAPHTHALENE-2-CARBOXIMIDAMIDE
2ACT3Ligand/IonACETATE ION
3GOL4Ligand/IonGLYCEROL
4SIN1Ligand/IonSUCCINIC ACID
5SO43Ligand/IonSULFATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:11 , SER A:145 , ASP A:192 , SER A:193 , GLN A:195 , SER A:198 , VAL A:216 , SER A:217 , TRP A:218 , GLY A:221 , CYS A:222 , GLY A:229 , SIN A:302BINDING SITE FOR RESIDUE 8UP A 301
02AC2SOFTWAREVAL A:30 , HIS A:46 , GLN A:195 , GLY A:196 , SER A:198 , 8UP A:301 , HOH A:439 , HOH A:482BINDING SITE FOR RESIDUE SIN A 302
03AC3SOFTWARELYS A:180 , HIS A:236 , HOH A:470BINDING SITE FOR RESIDUE SO4 A 303
04AC4SOFTWARETYR A:126 , ARG A:233 , HIS A:236 , HOH A:597 , HOH A:616BINDING SITE FOR RESIDUE SO4 A 304
05AC5SOFTWARELYS A:53 , HIS A:95 , THR A:178 , LYS A:180 , MET A:181 , HOH A:427 , HOH A:601 , HOH A:653BINDING SITE FOR RESIDUE SO4 A 305
06AC6SOFTWARELYS A:75 , LYS A:106 , LYS A:225 , HOH A:559 , HOH A:610BINDING SITE FOR RESIDUE GOL A 306
07AC7SOFTWAREVAL A:27 , TYR A:60 , ARG A:63 , LEU A:66 , ASN A:67BINDING SITE FOR RESIDUE GOL A 307
08AC8SOFTWAREARG A:20 , HIS A:22 , ARG A:23 , TYR A:51 , HOH A:523 , HOH A:665BINDING SITE FOR RESIDUE GOL A 308
09AC9SOFTWARETHR A:28 , TYR A:29 , TYR A:150 , HOH A:441 , HOH A:482 , HOH A:673BINDING SITE FOR RESIDUE GOL A 309
10BC1SOFTWARETHR A:178 , THR A:179 , HOH A:490 , HOH A:513 , HOH A:601 , HOH A:653BINDING SITE FOR RESIDUE ACT A 310
11BC2SOFTWAREPRO A:52 , LEU A:81 , THR A:91 , HOH A:433 , HOH A:477BINDING SITE FOR RESIDUE ACT A 311
12BC3SOFTWAREARG A:220 , HOH A:456BINDING SITE FOR RESIDUE ACT A 312

(-) SS Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1A:31 -A:47
2A:39 -A:110
3A:135 -A:204
4A:167 -A:183
5A:194 -A:222

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FUF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FUF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FUF)

(-) Exons   (0, 0)

(no "Exon" information available for 4FUF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains d4fufa_ A: Urokinase-type plasminogen activator (LMW U-PA), catalytic domain                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....ee.hhhhh..eeeeeee.....eeeeeeeeeee..eeeehhhhh....hhh.eeeee............eeeeeeeeee....ee....ee...eeeeee.............................eeeeee...............eeeeeeeehhhhhh....hhhhh...eeeee...............eeeeee..eeeeeeeeee..........eeeee...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4fuf A   1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTK 246
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FUF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FUF)

(-) Gene Ontology  (48, 48)

Asymmetric/Biological Unit(hide GO term definitions)

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  4fuf
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  UROK_HUMAN | P00749
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  3.4.21.73
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        UROK_HUMAN | P00749: 1c5w 1c5x 1c5y 1c5z 1ejn 1f5k 1f5l 1f92 1fv9 1gi7 1gi8 1gi9 1gj7 1gj8 1gj9 1gja 1gjb 1gjc 1gjd 1kdu 1lmw 1o3p 1o5a 1o5b 1o5c 1owd 1owe 1owh 1owi 1owj 1owk 1sc8 1sqa 1sqo 1sqt 1u6q 1urk 1vj9 1vja 1w0z 1w10 1w11 1w12 1w13 1w14 2fd6 2i9a 2i9b 2nwn 2o8t 2o8u 2o8w 2r2w 2vin 2vio 2vip 2viq 2viv 2viw 2vnt 3bt1 3bt2 3ig6 3kgp 3khv 3kid 3m61 3mhw 3mwi 3ox7 3oy5 3oy6 3pb1 3qn7 3u73 4dva 4dw2 4fu7 4fu8 4fu9 4fub 4fuc 4fud 4fue 4fug 4fuh 4fui 4fuj 4gly 4h42 4jk5 4jk6 4jni 4jnl 4k24 4mnv 4mnw 4mnx 4mny 4os1 4os2 4os4 4os5 4os6 4os7 4x0w 4x1n 4x1p 4x1q 4x1r 4x1s 4xsk 4zhl 4zhm 4zkn 4zko 4zkr 4zks 5hgg

(-) Related Entries Specified in the PDB File

4fu7 4fu8 4fu9 4fub 4fuc 4fud 4fue 4fug 4fuh 4fui 4fuj