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(-) Description

Title :  CRYSTAL STRUCTURES OF THE FIRST CONDENSATION DOMAIN OF THE CDA SYNTHETASE
 
Authors :  K. Bloudoff, T. M. Schmeing
Date :  14 Mar 13  (Deposition) - 19 Jun 13  (Release) - 28 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.69
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Nonribosomal Peptide Synthetase, Nrps Condensation Domain, Calcium- Dependent Antibiotic, Biosynthetic Protein, Peptide Bond Formation, Coa Dependant Acyltransferase Superfamily (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Bloudoff, D. Rodionov, T. M. Schmeing
Crystal Structures Of The First Condensation Domain Of Cda Synthetase Suggest Conformational Changes During The Synthetic Cycle Of Nonribosomal Peptide Synthetases.
J. Mol. Biol. V. 425 3137 2013
PubMed-ID: 23756159  |  Reference-DOI: 10.1016/J.JMB.2013.06.003

(-) Compounds

Molecule 1 - CDA PEPTIDE SYNTHETASE I
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: FIRST CONDENSATION DOMAIN
    Gene: SCO3230
    Organism Scientific: STREPTOMYCES COELICOLOR
    Organism Taxid: 100226
    Strain: ATCC BAA-471 / A3(2) / M145

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 14)

Asymmetric Unit (1, 14)
No.NameCountTypeFull Name
1MSE14Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 7)
No.NameCountTypeFull Name
1MSE7Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 7)
No.NameCountTypeFull Name
1MSE7Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4JN3)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JN3)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Arg A:232 -Gly A:233
2Gly B:355 -Ala B:356

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JN3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JN3)

(-) Exons   (0, 0)

(no "Exon" information available for 4JN3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:446
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhh......eeeeeeee....hhhhhhhhhhhhhhhhhhh.eeeee.....eeeee.......................eeeee.....hhhhhhhhhhhhhhh..........eeeeeeeee..eeeeeeeee....hhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................eeeeeeehhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeeee....hhhhhh......eeeeeeee.....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.......eeee......ee....eeeeeeee......eeeeeeee...eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh...hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jn3 A   4 NSSVRHGLTSAQHEVWLAQQLDPRGAHYRTGSCLEIDGPLDHAVLSRALRLTVAGTETLCSRFLTDEEGRPYRAYCPPAPEGSAAVEDPDGVPYTPVLLRHIDLSGHEDPEGEAQRWmDRDRATPLPLDRPGLSSHALFTLGGGRHLYYLGVHHIVIDGTSmALFYERLAEVYRALRDGRAVPAAAFGDTDRmVAGEEAYRASARYERDRAYWTGLFTDRPEPVSLTGRGGGRALAPTVRSLGLPPERTEVLGRAAEATGAHWARVVIAGVAAFLHRTTGARDVVVSVPVTGRYGANARITPGmVSNRLPLRLAVRPGESFARVVETVSEAmSGLLAHSRFRGEDLDRELGGAGVSGPTVNVmPYIRPVDFGGPVGLmRSISSGPTTDLNIVLTGTPESGLRVDFEGNPQVYGGQDLTVLQERFVRFLAELAADPAATVDEVALLT 449
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163 |     173       183       193  |    203       213       223       233       243       253       263       273       283       293       303   |   313       323       333 |     343       353       363  |    373       383       393       403       413       423       433       443      
                                                                                                                                               121-MSE                                     165-MSE                        196-MSE                                                                                                        307-MSE                     335-MSE                        366-MSE        381-MSE                                                                


Chain B from PDB  Type:PROTEIN  Length:447
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhh.......eeeeeeee....hhhhhhhhhhhhhhhhhhh.eeeee.....eeeee.......................eeeee.....hhhhhhhhhhhhhhh..........eeeeeeeee..eeeeeeeee....hhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................eeeeeeehhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeeee....hhhhhh......eeeeeeee.....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.......eeee......ee....eeeeeeee......eeeeeeee...eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh...hhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jn3 B   2 SENSSVRHGLTSAQHEVWLAQQLDPRGAHYRTGSCLEIDGPLDHAVLSRALRLTVAGTETLCSRFLTDEEGRPYRAYCPPAPEGSAAVEDPDGVPYTPVLLRHIDLSGHEDPEGEAQRWmDRDRATPLPLDRPGLSSHALFTLGGGRHLYYLGVHHIVIDGTSmALFYERLAEVYRALRDGRAVPAAAFGDTDRmVAGEEAYRASARYERDRAYWTGLFTDRPEPVSLTGRGGGRALAPTVRSLGLPPERTEVLGRAAEATGAHWARVVIAGVAAFLHRTTGARDVVVSVPVTGRYGANARITPGmVSNRLPLRLAVRPGESFARVVETVSEAmSGLLAHSRFRGEDLDRELGGAGVSGPTVNVmPYIRPVDFGGPVGLmRSISSGPTTDLNIVLTGTPESGLRVDFEGNPQVYGGQDLTVLQERFVRFLAELAADPAATVDEVALL 448
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161   |   171       181       191    |  201       211       221       231       241       251       261       271       281       291       301     | 311       321       331   |   341       351       361    |  371       381       391       401       411       421       431       441       
                                                                                                                                                 121-MSE                                     165-MSE                        196-MSE                                                                                                        307-MSE                     335-MSE                        366-MSE        381-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JN3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JN3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JN3)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg A:232 - Gly A:233   [ RasMol ]  
    Gly B:355 - Ala B:356   [ RasMol ]  
 
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 Related Entries

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UniProtKB/TrEMBL
        Q9Z4X6_STRCO | Q9Z4X6: 4jn5 5du9 5dua

(-) Related Entries Specified in the PDB File

4jn5