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(-) Description

Title :  CRYSTAL STRUCTURES OF THE FIRST CONDENSATION DOMAIN OF THE CDA SYNTHETASE
 
Authors :  K. Bloudoff, T. M. Schmeing
Date :  14 Mar 13  (Deposition) - 19 Jun 13  (Release) - 28 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.44
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Nonribosomal Peptide Synthetase, Nrps Condensation Domain, Calcium- Dependent Antibiotic, Biosynthetic Protein, Peptide Bond Formation, Coa Dependant Acyltransferase Superfamily (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Bloudoff, D. Rodionov, T. M. Schmeing
Crystal Structures Of The First Condensation Domain Of Cda Synthetase Suggest Conformational Changes During The Synthetic Cycle Of Nonribosomal Peptide Synthetases.
J. Mol. Biol. V. 425 3137 2013
PubMed-ID: 23756159  |  Reference-DOI: 10.1016/J.JMB.2013.06.003

(-) Compounds

Molecule 1 - CDA PEPTIDE SYNTHETASE I
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: FIRST CONDENSATION DOMAIN
    Gene: SCO3230
    Organism Scientific: STREPTOMYCES COELICOLOR
    Organism Taxid: 100226
    Strain: ATCC BAA-471 / A3(2) / M145

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4JN5)

(-) Sites  (0, 0)

(no "Site" information available for 4JN5)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JN5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JN5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JN5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JN5)

(-) Exons   (0, 0)

(no "Exon" information available for 4JN5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:435
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhh........eeeeeeee....hhhhhhhhhhhhhhhhhhh.eeeee.....eeeee.......................eeeee.....hhhhhhhhhhhhhhh..........eeeeeee.....eeeeeeee....hhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeeeehhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeeee......hhhhh.....eeeeeeee.....hhhhhhhhhhhhhhhhhh....hhhhhhhhhh.......eeee......ee....eeeeeeee......eeeeeeee...eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jn5 A   4 NSSVRHGLTSAQHEVWLAQQLDPRGAHYRTGSCLEIDGPLDHAVLSRALRLTVAGTETLCSRFLTDEEGRPYRAYCPPAPEGSAAVEDPDGVPYTPVLLRHIDLSGHEDPEGEAQRWMDRDRATPLPLDRPGLSSHALFTLGGGRHLYYLGVHHIVIDGTSMALFYERLAEVYRALRDGRAVPAAAFGDTDRMVAGEEAYRASARYERDRAYWTGLFTDGGRALAPTVRSLGLPPERTEVLGRAAEATGAHWARVVIAGVAAFLHRTTGARDVVVSVPVTGRYGANARITPGMVSNRLPLRLAVRPGESFARVVETVSEAMSGLLAHSRFRGEDLDRELGGAGVSGPTVNVMPYIRPVDFGGPVGLMRSISSGPTTDLNIVLTGTPESGLRVDFEGNPQVYGGQDLTVLQERFVRFLAELAADPAATVDEVALLT 449
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444     
                                                                                                                                                                                                                                                    222|                                                                                                                                                                                                                       
                                                                                                                                                                                                                                                     234                                                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:425
                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhh.......eeeeeeeee...hhhhhhhhhhhhhhhhhhh.eeeee.....eeeee.......................eeeee.....hhhhhhhhhhhhhhh..........eeeeeee....eeeeeeeee....hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........eeeeeehhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeeee....hhhhhh......eeeeeeee.....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.......eeee......ee....eeeeeeee.......eeeeeee...eeeeeee..hhhhhhhhhhhhhhhhh...hhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jn5 B   5 SSVRHGLTSAQHEVWLAQQLDPRGAHYRTGSCLEIDGPLDHAVLSRALRLTVAGTETLCSRFLTDEEGRPYRAYCPPAPEGSAAVEDPDGVPYTPVLLRHIDLSGHEDPEGEAQRWMDRDRATPLPLDRPGLSSHALFTLGGGRHLYYLGVHHIVIDGTSMALFYERLAEVYRALRDGRAVPAAAFGDTDRMVAGEEAYRASARYERDRAYWTGLFTDRPEPVSLTTVRSLGLPPERTEVLGRAAEATGAHWARVVIAGVAAFLHRTTGARDVVVSVPVTGRYGANARITPGMVSNRLPLRLAVRPGESFARVVETVSEAMSGLLAHSRFRGEDLDRELGGAGVSGPTVNVMPYIRPVDFGGPVGLMRSISSGPTTDLNIVLTGTPESGLRVDFEGLTVLQERFVRFLAELAADPAATVDEVALL 448
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224     ||244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404     ||423       433       443     
                                                                                                                                                                                                                                                           230|                                                                                                                                                                      410|                            
                                                                                                                                                                                                                                                            241                                                                                                                                                                       420
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JN5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JN5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JN5)

(-) Gene Ontology  (3, 3)

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        Q9Z4X6_STRCO | Q9Z4X6: 4jn3 5du9 5dua

(-) Related Entries Specified in the PDB File

4jn3