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(-) Description

Title :  FIRST CONDENSATION DOMAIN OF THE CALCIUM-DEPENDENT ANTIBIOTIC SYNTHETASE IN COMPLEX WITH SUBSTRATE ANALOGUE 3A
 
Authors :  K. Bloudoff, D. A. Alonzo, T. M. Schmeing
Date :  18 Sep 15  (Deposition) - 30 Mar 16  (Release) - 30 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  B  (1x)
Biol. Unit 2:  A  (1x)
Keywords :  Nonribosomal Peptide Synthetase, Condensation Domain, Chemical Probe, Substrate Analogue, Phosphopantetheine Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Bloudoff, D. A. Alonzo, T. M. Schmeing
Chemical Probes Allow Structural Insight Into The Condensation Reaction Of Nonribosomal Peptide Synthetases.
Cell Chem Biol V. 23 331 2016
PubMed-ID: 26991102  |  Reference-DOI: 10.1016/J.CHEMBIOL.2016.02.012

(-) Compounds

Molecule 1 - CDA PEPTIDE SYNTHETASE I
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES1-449
    Gene: SCO3230
    Mutation: YES
    Organism Scientific: STREPTOMYCES COELICOLOR (STRAIN ATCC BAA-471 / A3(2) / M145)
    Organism Taxid: 100226
    Strain: ATCC BAA-471 / A3(2) / M145

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x):  B
Biological Unit 2 (1x): A 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
15FQ2Ligand/IonN-PENTYL-L-ALANINAMIDE
2CL1Ligand/IonCHLORIDE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
15FQ1Ligand/IonN-PENTYL-L-ALANINAMIDE
2CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
15FQ1Ligand/IonN-PENTYL-L-ALANINAMIDE
2CL-1Ligand/IonCHLORIDE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:14 , CYS A:17 , VAL A:18 , HIS A:157 , SER A:386 , HOH A:694binding site for residue 5FQ A 501
2AC2SOFTWAREHIS B:157 , ASP B:161 , GLY B:162 , SER B:309 , 5FQ B:502 , HOH B:1028binding site for residue CL B 501
3AC3SOFTWARESER B:13 , ALA B:14 , GLN B:15 , HIS B:16 , VAL B:18 , TRP B:19 , LEU B:20 , ALA B:21 , HIS B:157 , ARG B:311 , SER B:386 , CL B:501 , HOH B:667 , HOH B:697 , HOH B:735binding site for residue 5FQ B 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DUA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DUA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DUA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DUA)

(-) Exons   (0, 0)

(no "Exon" information available for 5DUA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:445
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhh......eeeeeeee....hhhhhhhhhhhhhhhhhhh.eeeee.....eeeee.......................eeeee.....hhhhhhhhhhhhhhh..........eeeeeeeee..eeeeeeeee....hhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhh.....................eeeeeeehhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeeee....hhhhhh......eeeeeeee.....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.......eeee......ee....eeeeeeee......eeeeeeee...eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh...hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dua A   4 NSSVRHGLTSAQHCVWLAQQLDPRGAHYRTGSCLEIDGPLDHAVLSRALRLTVAGTETLCSRFLTDEEGRPYRAYCPPAPEGSAAVEDPDGVPYTPVLLRHIDLSGHEDPEGEAQRWMDRDRATPLPLDRPGLSSHALFTLGGGRHLYYLGVHHIVIDGTSMALFYERLAEVYRALRDGRAVPAAAFGDTDRMVAGEEAYRASARYERDRAYWTGLFTDRPEPVSLTGGGGRALAPTVRSLGLPPERTEVLGRAAEATGAHWARVVIAGVAAFLHRTTGARDVVVSVPVTGRYGANARITPGMVSNRLPLRLAVRPGESFARVVETVSEAMSGLLAHSRFRGEDLDRELGGAGVSGPTVNVMPYIRPVDFGGPVGLMRSISSGPTTDLNIVLTGTPESGLRVDFEGNPQVYGGQDLTVLQERFVRFLAELAADPAATVDEVALLT 449
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444     
                                                                                                                                                                                                                                                             231|                                                                                                                                                                                                                        
                                                                                                                                                                                                                                                              233                                                                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:437
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhh......eeeeeeee....hhhhhhhhhhhhhhhhhhh.eeeee.....eeeee.......................eeeee.....hhhhhhhhhhhhhhh..........eeeeeeeee..eeeeeeeee....hhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeehhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeeee....hhhhhh......eeeeeeee.....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhh......eeee......ee....eeeeeeee......eeeeeeee...eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh...hhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dua B   4 NSSVRHGLTSAQHCVWLAQQLDPRGAHYRTGSCLEIDGPLDHAVLSRALRLTVAGTETLCSRFLTDEEGRPYRAYCPPAPEGSAAVEDPDGVPYTPVLLRHIDLSGHEDPEGEAQRWMDRDRATPLPLDRPGLSSHALFTLGGGRHLYYLGVHHIVIDGTSMALFYERLAEVYRALRDGRAVPAAAFGDTDRMVAGEEAYRASARYERDRAYWTGLFTDPEPVSGRALAPTVRSLGLPPERTEVLGRAAEATGAHWARVVIAGVAAFLHRTTGARDVVVSVPVTGRYGANARITPGMVSNRLPLRLAVRPGESFARVVETVSEAMSGLLAHSRFRGEDLDRELGGAVSGPTVNVMPYIRPVDFGGPVGLMRSISSGPTTDLNIVLTGTPESGLRVDFEGNPQVYGGQDLTVLQERFVRFLAELAADPAATVDEVALL 448
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       224   ||  240       250       260       270       280       290       300       310       320       330       340       350     ||361       371       381       391       401       411       421       431       441       
                                                                                                                                                                                                                                                    222| 228|                                                                                                                      356|                                                                                          
                                                                                                                                                                                                                                                     224  235                                                                                                                       358
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DUA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DUA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DUA)

(-) Gene Ontology  (3, 3)

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 Related Entries

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        Q9Z4X6_STRCO | Q9Z4X6: 4jn3 4jn5 5du9

(-) Related Entries Specified in the PDB File

5du9