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(-) Description

Title :  SECRETED CHLAMYDIAL PROTEIN PGP3, C-TERMINAL DOMAIN
 
Authors :  A. Galaleldeen, A. B. Taylor, D. Chen, S. P. Holloway, G. Zhong, P. J. Har
Date :  25 Feb 13  (Deposition) - 05 Jun 13  (Release) - 09 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Virulence Factor, Secreted Protein, Chlamydia, Inflammatory Response, Tnf, Cell Invasion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Galaleldeen, A. B. Taylor, D. Chen, J. P. Schuermann, S. P. Holloway S. Hou, S. Gong, G. Zhong, P. J. Hart
Structure Of The Chlamydia Trachomatis Immunodominant Antigen Pgp3.
J. Biol. Chem. V. 288 22068 2013
PubMed-ID: 23703617  |  Reference-DOI: 10.1074/JBC.M113.475012

(-) Compounds

Molecule 1 - VIRULENCE PLASMID PROTEIN PGP3-D
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PAG8H
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL DOMAIN (UNP RESIDUES 113-264)
    Gene: PGP3
    Organism Scientific: CHLAMYDIA TRACHOMATIS
    Organism Taxid: 759364
    Strain: D-LC

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2K1Ligand/IonPOTASSIUM ION
3MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:197 , HOH A:479 , TYR B:197 , TYR C:197 , HOH C:410 , HOH C:411BINDING SITE FOR RESIDUE K A 301
2AC2SOFTWAREGLY A:150 , LYS A:151 , HOH A:411 , HOH A:423 , HOH A:487 , GLN B:130BINDING SITE FOR RESIDUE GOL A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JDN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JDN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JDN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JDN)

(-) Exons   (0, 0)

(no "Exon" information available for 4JDN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee...eee...............eeeeeeee.......eeeeeeeeeee...eeeeeeeee.......eeeeeee....eeeeeeeeee......eeeeeeeee.....eee.......hhhhh...eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4jdn A 118 KAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSmFLVSADIIASRmEGGVVLALVREGDSKPCAISYGYSSGVPNLCSLRTSITNTGLTPTTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQ 261
                                   127       137       147       157    |  167      |177       187       197       207       217       227       237       247       257    
                                                                      162-MSE     174-MSE                                                                                   


Chain B from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...eee...............eeeeeeee.......eeeeeeeeeee...eeeeeeeee.......eeeeeee....eeeeeeeeee......eeeeeeeee.....eee.......hhhhh...eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jdn B 119 AFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSmFLVSADIIASRmEGGVVLALVREGDSKPCAISYGYSSGVPNLCSLRTSITNTGLTPTTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQ 261
                                   128       138       148       158   |   168     | 178       188       198       208       218       228       238       248       258   
                                                                     162-MSE     174-MSE                                                                                   


Chain C from PDB  Type:PROTEIN  Length:147
                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...eee...............eeeeeeee.......eeeeeeeeeee...eeeeeeeee.......eeeeeee....eeeeeeeeee......eeeeeeeee.....eee.......hhhhh...eeeeeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jdn C 118 KAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSmFLVSADIIASRmEGGVVLALVREGDSKPCAISYGYSSGVPNLCSLRTSITNTGLTPTTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTNA 264
                                   127       137       147       157    |  167      |177       187       197       207       217       227       237       247       257       
                                                                      162-MSE     174-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JDN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JDN)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

4jdm 4jdo