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(-) Description

Title :  SECRETED CHLAMYDIAL PROTEIN PGP3, COILED-COIL DELETION
 
Authors :  A. Galaleldeen, A. B. Taylor, D. Chen, S. P. Holloway, G. Zhong, P. J. Har
Date :  25 Feb 13  (Deposition) - 05 Jun 13  (Release) - 31 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Biol. Unit 3:  G,H,I  (1x)
Keywords :  Virulence Factor, Secreted Protein, Chlamydia, Inflammatory Response, Tnf, Cell Invasion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Galaleldeen, A. B. Taylor, D. Chen, J. P. Schuermann, S. P. Holloway S. Hou, S. Gong, G. Zhong, P. J. Hart
Structure Of The Chlamydia Trachomatis Immunodominant Antigen Pgp3.
J. Biol. Chem. V. 288 22068 2013
PubMed-ID: 23703617  |  Reference-DOI: 10.1074/JBC.M113.475012

(-) Compounds

Molecule 1 - VIRULENCE PLASMID PROTEIN PGP3-D
    Chains: A, B, C, D, E, F, G, H, I
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PAG8H
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL AND C-TERMINAL DOMAIN FUSION
    Gene: ERS082928_02094
    Organism Scientific: CHLAMYDIA TRACHOMATIS
    Organism Taxid: 813

 Structural Features

(-) Chains, Units

  123456789
Asymmetric Unit : ABCDEFGHI
Biological Unit 1 (1x): ABC      
Biological Unit 2 (1x):    DEF   
Biological Unit 3 (1x):       GHI

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 46)

Asymmetric Unit (2, 46)
No.NameCountTypeFull Name
1MSE43Mod. Amino AcidSELENOMETHIONINE
2NA3Ligand/IonSODIUM ION
Biological Unit 1 (1, 14)
No.NameCountTypeFull Name
1MSE14Mod. Amino AcidSELENOMETHIONINE
2NA-1Ligand/IonSODIUM ION
Biological Unit 2 (1, 14)
No.NameCountTypeFull Name
1MSE14Mod. Amino AcidSELENOMETHIONINE
2NA-1Ligand/IonSODIUM ION
Biological Unit 3 (1, 15)
No.NameCountTypeFull Name
1MSE15Mod. Amino AcidSELENOMETHIONINE
2NA-1Ligand/IonSODIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:197 , HOH A:412 , TYR B:197 , HOH B:308 , TYR C:197 , HOH C:328BINDING SITE FOR RESIDUE NA A 301
2AC2SOFTWAREGLU D:175 , TYR D:197 , HOH D:485 , TYR E:197 , TYR F:197BINDING SITE FOR RESIDUE NA D 301
3AC3SOFTWARETYR G:197 , TYR H:197 , HOH H:343 , TYR I:197 , HOH I:361BINDING SITE FOR RESIDUE NA G 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JDO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JDO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JDO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JDO)

(-) Exons   (0, 0)

(no "Exon" information available for 4JDO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..eeeeee.eeee..........eeee......eeeeeee...eeeeee......eeeeeee...eeeeee...eee...............eeeeeeee.......eeeeeeeeeee...eeeeeeeee.......eeeeeee....eeeeeeeeee......eeeeeeeee.....eee.......hhhhh...eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jdo A   2 GNSGFYLYNTENCVFADNIKVGQmTEPLKDQQIILGTKSTPVAAKmTASDGISLTVSNNSSTNASITIGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSmFLVSADIIASRmEGGVVLALVREGDSKPCAISYGYSSGVPNLCSLRTSITNTGLTPTTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQ 261
                                    11        21   |    31        41     |  51        61        71|      126       136       146       156     | 166       176       186       196       206       216       226       236       246       256     
                                                  25-MSE                47-MSE                  71|                                          162-MSE     174-MSE                                                                                   
                                                                                                117                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..eeeeee.eeee..........eeee......eeeeeee...eeeeee......eeeeeee...eeeeee...eee...............eeeeeeee.......eeeeeeeeeee...eeeeeeeee.......eeeeeee....eeeeeeeeee......eeeeeeeee.....eee.......hhhhh...eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jdo B   1 mGNSGFYLYNTENCVFADNIKVGQmTEPLKDQQIILGTKSTPVAAKmTASDGISLTVSNNSSTNASITIGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSmFLVSADIIASRmEGGVVLALVREGDSKPCAISYGYSSGVPNLCSLRTSITNTGLTPTTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTN 263
                            |       10        20    |   30        40      | 50        60        70||     125       135       145       155      |165       175       185       195       205       215       225       235       245       255        
                            1-MSE                  25-MSE                47-MSE                  71|                                          162-MSE     174-MSE                                                                                     
                                                                                                 117                                                                                                                                                  


Chain C from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..eeeeee.eeee..........eeee......eeeeeee...eeeeeee.....eeeeeee...eeeeee...eee..ee...........eeeeeeee.......eeeeeeeeeee...eeeeeeeee.......eeeeeee....eeeeeeeeee......eeeeeeeeee....eee.......hhhhh...eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jdo C   1 mGNSGFYLYNTENCVFADNIKVGQmTEPLKDQQIILGTKSTPVAAKmTASDGISLTVSNNSSTNASITIGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSmFLVSADIIASRmEGGVVLALVREGDSKPCAISYGYSSGVPNLCSLRTSITNTGLTPTTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQT 262
                            |       10        20    |   30        40      | 50        60        70||     125       135       145       155      |165       175       185       195       205       215       225       235       245       255       
                            1-MSE                  25-MSE                47-MSE                  71|                                          162-MSE     174-MSE                                                                                    
                                                                                                 117                                                                                                                                                 


Chain D from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..eeeeee.eeee..........eeee......eeeeeee...eeeee.......eeeeeee...eeeeee...eee..ee...........eeeeeeee.......eeeeeeeeeee...eeeeeeeee.......eeeeeee....eeeeeeeeee......eeeeeeeeee....eee.......hhhhh...eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jdo D   2 GNSGFYLYNTENCVFADNIKVGQmTEPLKDQQIILGTKSTPVAAKmTASDGISLTVSNNSSTNASITIGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSmFLVSADIIASRmEGGVVLALVREGDSKPCAISYGYSSGVPNLCSLRTSITNTGLTPTTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTN 263
                                    11        21   |    31        41     |  51        61        71|      126       136       146       156     | 166       176       186       196       206       216       226       236       246       256       
                                                  25-MSE                47-MSE                  71|                                          162-MSE     174-MSE                                                                                     
                                                                                                117                                                                                                                                                  


Chain E from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..eeeeee.eeee..........eeee......eeeeeee...eeeeee.....eeeeee...eeeeee...eee..ee...........eeeeeeee.......eeeeeeeeeee...eeeeeeeee.......eeeeeee....eeeeeeeeee......eeeeeeeeee....eee.......hhhhh...eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jdo E   1 mGNSGFYLYNTENCVFADNIKVGQmTEPLKDQQIILGTKSTPVAAKmTASDGISLTVSNNSNASITIGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSmFLVSADIIASRmEGGVVLALVREGDSKPCAISYGYSSGVPNLCSLRTSITNTGLTPTTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQT 262
                            |       10        20    |   30        40      | 50        60||     117       127       137       147       157    |  167      |177       187       197       207       217       227       237       247       257     
                            1-MSE                  25-MSE                47-MSE        61|     71|                                          162-MSE     174-MSE                                                                                    
                                                                                        64     117                                                                                                                                                 


Chain F from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..eeeeee.eeee..........eeee......eeeeeee...eeeeee......eeeeeee...eeeeee...eee..ee...........eeeeeeee.......eeeeeeeeeee...eeeeeeeee.......eeeeeee....eeeeeeeeee......eeeeeeeeee....eee.......hhhhh...eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jdo F   1 mGNSGFYLYNTENCVFADNIKVGQmTEPLKDQQIILGTKSTPVAAKmTASDGISLTVSNNSSTNASITIGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSmFLVSADIIASRmEGGVVLALVREGDSKPCAISYGYSSGVPNLCSLRTSITNTGLTPTTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQT 262
                            |       10        20    |   30        40      | 50        60        70||     125       135       145       155      |165       175       185       195       205       215       225       235       245       255       
                            1-MSE                  25-MSE                47-MSE                  71|                                          162-MSE     174-MSE                                                                                    
                                                                                                 117                                                                                                                                                 


Chain G from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..eeeeee.eeee..........eeee......eeeeeee...eeeeee.......eeeeee...eeeeee...eee...............eeeeeeee.......eeeeeeeeeee...eeeeeeeee.......eeeeeee....eeeeeeeeee......eeeeeeeee.....eee.......hhhhh...eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jdo G   1 mGNSGFYLYNTENCVFADNIKVGQmTEPLKDQQIILGTKSTPVAAKmTASDGISLTVSNNSSTNASITIGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSmFLVSADIIASRmEGGVVLALVREGDSKPCAISYGYSSGVPNLCSLRTSITNTGLTPTTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQT 262
                            |       10        20    |   30        40      | 50        60        70||     125       135       145       155      |165       175       185       195       205       215       225       235       245       255       
                            1-MSE                  25-MSE                47-MSE                  71|                                          162-MSE     174-MSE                                                                                    
                                                                                                 117                                                                                                                                                 


Chain H from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee..eeeeee.eeee..........eeee......eeeeeee...eeeeee......eeeeeee...eeeeee...eee..ee...........eeeeeeee.......eeeeeeeeeee...eeeeeeeee.......eeeeeee....eeeeeeeeee......eeeeeeeeee....eee.......hhhhh...eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4jdo H   1 mGNSGFYLYNTENCVFADNIKVGQmTEPLKDQQIILGTKSTPVAAKmTASDGISLTVSNNSSTNASITIGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSmFLVSADIIASRmEGGVVLALVREGDSKPCAISYGYSSGVPNLCSLRTSITNTGLTPTTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQ 261
                            |       10        20    |   30        40      | 50        60        70||     125       135       145       155      |165       175       185       195       205       215       225       235       245       255      
                            1-MSE                  25-MSE                47-MSE                  71|                                          162-MSE     174-MSE                                                                                   
                                                                                                 117                                                                                                                                                


Chain I from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..eeeeee.eeee..........eeee......eeeeeee...eeeeee......eeeeeee...eeeeee...eee..ee...........eeeeeeee.......eeeeeeeeeee...eeeeeeeee.......eeeeeee....eeeeeeeeee......eeeeeeeeee....eee.......hhhhh...eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jdo I   1 mGNSGFYLYNTENCVFADNIKVGQmTEPLKDQQIILGTKSTPVAAKmTASDGISLTVSNNSSTNASITIGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSmFLVSADIIASRmEGGVVLALVREGDSKPCAISYGYSSGVPNLCSLRTSITNTGLTPTTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQT 262
                            |       10        20    |   30        40      | 50        60        70||     125       135       145       155      |165       175       185       195       205       215       225       235       245       255       
                            1-MSE                  25-MSE                47-MSE                  71|                                          162-MSE     174-MSE                                                                                    
                                                                                                 117
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JDO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JDO)

(-) Pfam Domains  (0, 0)

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 Related Entries

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(-) Related Entries Specified in the PDB File

4jdm 4jdn