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(-) Description

Title :  SECRETED CHLAMYDIAL PROTEIN PGP3, FULL-LENGTH
 
Authors :  A. Galaleldeen, A. B. Taylor, D. Chen, S. P. Holloway, G. Zhong, P. J. Har
Date :  25 Feb 13  (Deposition) - 05 Jun 13  (Release) - 09 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Virulence Factor, Secreted Protein, Chlamydia, Inflammatory Response, Tnf, Cell Invasion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Galaleldeen, A. B. Taylor, D. Chen, J. P. Schuermann, S. P. Holloway S. Hou, S. Gong, G. Zhong, P. J. Hart
Structure Of The Chlamydia Trachomatis Immunodominant Antigen Pgp3.
J. Biol. Chem. V. 288 22068 2013
PubMed-ID: 23703617  |  Reference-DOI: 10.1074/JBC.M113.475012

(-) Compounds

Molecule 1 - VIRULENCE PLASMID PROTEIN PGP3-D
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PGP3
    Organism Scientific: CHLAMYDIA TRACHOMATIS
    Organism Taxid: 759364
    Strain: D-LC

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 28)

Asymmetric Unit (1, 28)
No.NameCountTypeFull Name
1MSE28Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 14)
No.NameCountTypeFull Name
1MSE14Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 14)
No.NameCountTypeFull Name
1MSE14Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4JDM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JDM)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu C:114 -Gly C:115
2Leu F:114 -Gly F:115

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JDM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JDM)

(-) Exons   (0, 0)

(no "Exon" information available for 4JDM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..eeeeee...ee..........eeee......eeeeeee......ee........eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee...eee..ee...........eeeeeeee.......eeeeeeeeeee...eeeeeeeee.......eeeeeee....eeeeeeeeee......eeeeeeeeee....eee.......hhhhh...eeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jdm A   2 GNSGFYLYNTENCVFADNIKVGQmTEPLKDQQIILGTKSTPVAAKmTASDGISLTVSNNSSTNASITIGLDAEKAYQLILEKLGNQILDGIADTIVDSTVQDILDKITTDPSLGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSmFLVSADIIASRmEGGVVLALVREGDSKPCAISYGYSSGVPNLCSLRTSITNTGLTPTTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTNA 264
                                    11        21   |    31        41     |  51        61        71        81        91       101       111       121       131       141       151       161|      171  |    181       191       201       211       221       231       241       251       261   
                                                  25-MSE                47-MSE                                                                                                            162-MSE     174-MSE                                                                                      


Chain B from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..eeeeee.eeee..........eeee......eeeeeehhhhheeee........eeeee..hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee...eee...............eeeeeeee.......eeeeeeeeeeee..eeeeeeeee.......eeeeeee....eeeeeeeeee......eeeeeeeee.....eee.......hhhhh...eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jdm B   1 mGNSGFYLYNTENCVFADNIKVGQmTEPLKDQQIILGTKSTPVAAKmTASDGISLTVSNNSSTNASITIGLDAEKAYQLILEKLGNQILDGIADTIVDSTVQDILDKITTDPSLGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSmFLVSADIIASRmEGGVVLALVREGDSKPCAISYGYSSGVPNLCSLRTSITNTGLTPTTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTN 263
                            |       10        20    |   30        40      | 50        60        70        80        90       100       110       120       130       140       150       160 |     170   |   180       190       200       210       220       230       240       250       260   
                            1-MSE                  25-MSE                47-MSE                                                                                                            162-MSE     174-MSE                                                                                     


Chain C from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee..eeeeee.eeee..........eeeee.....eeeeeee....eeee........eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee...eee..ee...........eeeeeeee.......eeeeeeeeeeee..eeeeeeeee.......eeeeeee....eeeeeeeeee......eeeeeeeeee....eee.......hhhhh...eeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jdm C  -4 GPLGSmGNSGFYLYNTENCVFADNIKVGQmTEPLKDQQIILGTKSTPVAAKmTASDGISLTVSNNSSTNASITIGLDAEKAYQLILEKLGNQILDGIADTIVDSTVQDILDKITTDPSLGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSmFLVSADIIASRmEGGVVLALVREGDSKPCAISYGYSSGVPNLCSLRTSITNTGLTPTTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTNA 264
                                 |   5        15        25        35        45 |      55        65        75        85        95       105       115       125       135       145       155      |165       175       185       195       205       215       225       235       245       255         
                                 1-MSE                  25-MSE                47-MSE                                                                                                            162-MSE     174-MSE                                                                                      


Chain D from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..eeeeee...ee..........eeee......eeeeeee......ee........eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee...eee..ee...........eeeeeeee.......eeeeeeeeeeee..eeeeeeeee.......eeeeeee....eeeeeeeeee......eeeeeeeeee....eee.......hhhhh...eeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jdm D   2 GNSGFYLYNTENCVFADNIKVGQmTEPLKDQQIILGTKSTPVAAKmTASDGISLTVSNNSSTNASITIGLDAEKAYQLILEKLGNQILDGIADTIVDSTVQDILDKITTDPSLGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSmFLVSADIIASRmEGGVVLALVREGDSKPCAISYGYSSGVPNLCSLRTSITNTGLTPTTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTNA 264
                                    11        21   |    31        41     |  51        61        71        81        91       101       111       121       131       141       151       161|      171  |    181       191       201       211       221       231       241       251       261   
                                                  25-MSE                47-MSE                                                                                                            162-MSE     174-MSE                                                                                      


Chain E from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..eeeeee.eeee..........eeee......eeeeeehhhhheeee........eeeee..hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..........eeeeee...eee...............eeeeeeee.......eeeeeeeeeeee..eeeeeeeee.....eeeeeeeee....eeeeeeeeee......eeeeeeeee.....eee.......hhhhh...eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jdm E   1 mGNSGFYLYNTENCVFADNIKVGQmTEPLKDQQIILGTKSTPVAAKmTASDGISLTVSNNSSTNASITIGLDAEKAYQLILEKLGNQILDGIADTIVDSTVQDILDKITTDPSLGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSmFLVSADIIASRmEGGVVLALVREGDSKPCAISYGYSSGVPNLCSLRTSITNTGLTPTTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTN 263
                            |       10        20    |   30        40      | 50        60        70        80        90       100       110       120       130       140       150       160 |     170   |   180       190       200       210       220       230       240       250       260   
                            1-MSE                  25-MSE                47-MSE                                                                                                            162-MSE     174-MSE                                                                                     


Chain F from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee..eeeeee.eeee..........eeeee.....eeeeeee....eeee........eeeee..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh........eeeeee...eee..ee...........eeeeeeee.......eeeeeeeeeeee..eeeeeeeee.......eeeeeee....eeeeeeeeee......eeeeeeeeee....eee.......hhhhh...eeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jdm F  -4 GPLGSmGNSGFYLYNTENCVFADNIKVGQmTEPLKDQQIILGTKSTPVAAKmTASDGISLTVSNNSSTNASITIGLDAEKAYQLILEKLGNQILDGIADTIVDSTVQDILDKITTDPSLGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSmFLVSADIIASRmEGGVVLALVREGDSKPCAISYGYSSGVPNLCSLRTSITNTGLTPTTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTNA 264
                                 |   5        15        25        35        45 |      55        65        75        85        95       105       115       125       135       145       155      |165       175       185       195       205       215       225       235       245       255         
                                 1-MSE                  25-MSE                47-MSE                                                                                                            162-MSE     174-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JDM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JDM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JDM)

(-) Gene Ontology  (0, 0)

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  Cis Peptide Bonds
    Leu C:114 - Gly C:115   [ RasMol ]  
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4jdn 4jdo