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(-) Description

Title :  CRYSTAL STRUCTURE OF KYNURENINE 3-MONOOXYGENASE (KMO-396PROT)
 
Authors :  M. Amaral, C. Levy, D. J. Heyes, P. Lafite, T. F. Outeiro, F. Giorgini, D. N. S. Scrutton
Date :  05 Feb 13  (Deposition) - 10 Apr 13  (Release) - 01 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Monooxygenase Kynuramine, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Amaral, C. Levy, D. J. Heyes, P. Lafite, T. F. Outeiro, F. Giorgini, D. Leys, N. S. Scrutton
Structural Basis Of Kynurenine 3-Monooxygenase Inhibition.
Nature V. 496 382 2013
PubMed-ID: 23575632  |  Reference-DOI: 10.1038/NATURE12039

(-) Compounds

Molecule 1 - KYNURENINE 3-MONOOXYGENASE
    Chains: A, B
    EC Number: 1.14.13.9
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: BIOSYNTHESIS OF NICOTINIC ACID PROTEIN 4, KYNURENINE 3- HYDROXYLASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:8 , GLY A:9 , GLY A:11 , LEU A:12 , VAL A:13 , ASP A:32 , PHE A:33 , ARG A:34 , ASN A:46 , LYS A:48 , LEU A:52 , ALA A:53 , ARG A:109 , HIS A:131 , LEU A:133 , CYS A:167 , ASP A:168 , GLY A:169 , GLY A:313 , ASP A:314 , GLN A:325 , GLY A:326 , MET A:327 , ASN A:328 , HOH A:504 , HOH A:511 , HOH A:512 , HOH A:533 , HOH A:544 , HOH A:565 , HOH A:579 , HOH A:603 , HOH A:604BINDING SITE FOR RESIDUE FAD A 401
2AC2SOFTWAREILE B:8 , GLY B:9 , GLY B:11 , LEU B:12 , VAL B:13 , ASP B:32 , PHE B:33 , ARG B:34 , LEU B:52 , ALA B:53 , ARG B:109 , HIS B:131 , LYS B:132 , LEU B:133 , CYS B:167 , ASP B:168 , GLY B:169 , ALA B:173 , TYR B:195 , ASP B:314 , GLN B:325 , GLY B:326 , MET B:327 , ASN B:328 , HOH B:501 , HOH B:502 , HOH B:503 , HOH B:504 , HOH B:509 , HOH B:600 , HOH B:625 , HOH B:635 , HOH B:636BINDING SITE FOR RESIDUE FAD B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J31)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:300 -Pro A:301
2Lys B:300 -Pro B:301

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J31)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J31)

(-) Exons   (0, 0)

(no "Exon" information available for 4J31)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:366
                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhhh.eeeeee...............eeeeehhhhhhhhh.hhhhhhhhhhhheeeeeeeee.....eeeeee.eeeeeeehhhhhhhhhhhhh....eeee..eeeeee.....eeeeee...eeeee.eeee.....hhhhhhhh.....eeeeeee.eeeeeeee...................eeeeee....eeeeee.....eeeeeeeehhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhh.....eeeeeee........eee.hhhhhh......hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4j31 A   2 SESVAIIGAGLVGCLAALAFSKEGYNVTLYDFRQDPRLDTTNLKSINLAISARGIDALKSIDPDACEHILQDMIPMKGRMIHDLKGRQESQLYGEAINSINRSVLNNSLLDELEKSTTELKFGHKLVKIEWTDDKQICHFAITPHTEKYDFVIGCDGAYSATRSQMQRKVEMDFSQEYMNLRYIELYIPPTEEFKPNYGGNFAIAPDHLHIWPRHKFMLIALANSDGSFTSTFFGSKDQISDLITSKSRVREFLIENFPDIINIMDLDDAVKRFITYPKESLVCVNCKPYDVPGGKAILLGDAAHAMVPFYGQGMNCGFEDVRILMALLKKHSGDRSRAFTEYTQTRHKDLVSITELAKRNYKEMS 378
                                    11        21        31        41||      54        64        74        84        94  ||   107       117       127       137       147 ||    162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372      
                                                                   42|                                                 97|                                             149|                                                                                                                                                                                                                               
                                                                    46                                                 101                                              155                                                                                                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:375
                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhhh.eeeeee..................eeeeehhhhhhhhhhhhhhhhhhh...eeeeeeeee.....eeeeee.eeeeehhhhhhhhhhhhhh...eeee..eeeeee.....eeeeeee.....eeeeeee.eeee.....hhhhhhhhh....eeeeeee.eeeeeeee...................eeeeee....eeeeee.....eeeeeeeehhhhhhhh.hhhhhhhhhhhhh.......hhhhhhhhhhh.....eeeeeee..ee....eee.hhhhhh......hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j31 B   2 SESVAIIGAGLVGCLAALAFSKEGYNVTLYDFRQDPRLDTTKNKNLKSINLAISARGIDALKSIDPDACEHILQDMIPMKGRMIHDLKGRQESQLYAINSINRSVLNNSLLDELEKSTTELKFGHKLVKIEWTDDKQICHFAIGEDLKTPHTEKYDFVIGCDGAYSATRSQMQRKVEMDFSQEYMNLRYIELYIPPTEEFKPNYGGNFAIAPDHLHIWPRHKFMLIALANSDGSFTSTFFGSKDQISDLITSKSRVREFLIENFPDIINIMDLDDAVKRFITYPKESLVCVNCKPYDVPGGKAILLGDAAHAMVPFYGQGMNCGFEDVRILMALLKKHSGDRSRAFTEYTQTRHKDLVSITELAKRNYKEMSHDV 381
                                    11        21        31        41        51        61        71        81        91     ||106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376     
                                                                                                                          97|                                                                                                                                                                                                                                                                                      
                                                                                                                          103
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J31)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J31)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J31)

(-) Gene Ontology  (19, 19)

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  4j31
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  KMO_YEAST | P38169
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  1.14.13.9
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KMO_YEAST | P38169: 4j2w 4j33 4j34 4j36

(-) Related Entries Specified in the PDB File

4j2w KMO-396PROT-SE KYNURAMINE 3-MONOOXYGENASE SELENOMETHIONINE DERIVATIVE.
4j33
4j34
4j36