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(-) Description

Title :  CRYSTAL STRUCTURE OF KYNURENINE 3-MONOOXYGENASE (KMO-394)
 
Authors :  M. Amaral, C. Levy, D. J. Heyes, P. Lafite, T. F. Outeiro, F. Giorgini, D. N. S. Scrutton
Date :  05 Feb 13  (Deposition) - 10 Apr 13  (Release) - 01 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.82
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Monooxygenase Kynurenine Kmo-394, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Amaral, C. Levy, D. J. Heyes, P. Lafite, T. F. Outeiro, F. Giorgini, D. Leys, N. S. Scrutton
Structural Basis Of Kynurenine 3-Monooxygenase Inhibition.
Nature V. 496 382 2013
PubMed-ID: 23575632  |  Reference-DOI: 10.1038/NATURE12039

(-) Compounds

Molecule 1 - KYNURENINE 3-MONOOXYGENASE
    Chains: A, B
    EC Number: 1.14.13.9
    Engineered: YES
    Fragment: UNP RESIDUES 1-396
    Gene: BNA4, YBL098W, YBL0828
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: BIOSYNTHESIS OF NICOTINIC ACID PROTEIN 4, KYNURENINE 3- HYDROXYLASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:9 , GLY A:11 , LEU A:12 , VAL A:13 , ASP A:32 , PHE A:33 , ARG A:34 , LYS A:48 , LEU A:52 , ALA A:53 , ARG A:109 , HIS A:131 , LYS A:132 , LEU A:133 , CYS A:167 , ASP A:168 , GLY A:169 , ALA A:173 , TYR A:195 , GLY A:313 , ASP A:314 , GLN A:325 , GLY A:326 , MET A:327 , ASN A:328 , HOH A:502 , HOH A:503 , HOH A:504 , HOH A:507 , HOH A:514 , HOH A:517 , HOH A:525 , HOH A:537 , HOH A:622 , HOH A:676 , HOH A:700 , HOH A:776BINDING SITE FOR RESIDUE FAD A 401
2AC2SOFTWAREGLY B:9 , GLY B:11 , LEU B:12 , VAL B:13 , ASP B:32 , PHE B:33 , ARG B:34 , LYS B:48 , LEU B:52 , ALA B:53 , ARG B:109 , HIS B:131 , LYS B:132 , LEU B:133 , CYS B:167 , ASP B:168 , GLY B:169 , ALA B:173 , TYR B:195 , ASP B:314 , GLN B:325 , GLY B:326 , MET B:327 , ASN B:328 , HOH B:501 , HOH B:502 , HOH B:504 , HOH B:505 , HOH B:516 , HOH B:520 , HOH B:526 , HOH B:532 , HOH B:557 , HOH B:585 , HOH B:736 , HOH B:744BINDING SITE FOR RESIDUE FAD B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J33)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:300 -Pro A:301
2Lys B:300 -Pro B:301

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J33)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J33)

(-) Exons   (0, 0)

(no "Exon" information available for 4J33)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:383
                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..hhhhhhhhhhhhhh..eeeeee..................eeeeehhhhhhhhhhhhhhhhhhh...ee..eeeee.....eeeee....eeeeehhhhhhhhhhhhh....eeee.eeeeeee.....eeeeeee..eeeeee.eeee.....hhhhhhhhh....eeeeee...eeeeeee...................eeeeee....eeeeee.....eeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.....eeeeee..ee....eee.hhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j33 A   1 MSESVAIIGAGLVGCLAALAFSKEGYNVTLYDFRQDPRLDTTKNKNLKSINLAISARGIDALKSIDPDACEHILQDMIPMKGRMIHDLKGRQESQLYGEAINSINRSVLNNSLLDELEKSTTELKFGHKLVKIEWTDDKQICHFAIGTPHTEKYDFVIGCDGAYSATRSQMQRKVEMDFSQEYMNLRYIELYIPPTEEFKPNYGGNFAIAPDHLHIWPRHKFMLIALANSDGSFTSTFFGSKDQISDLITSKSRVREFLIENFPDIINIMDLDDAVKRFITYPKESLVCVNCKPYDVPGGKAILLGDAAHAMVPFYGQGMNCGFEDVRILMALLKKHSGDRSRAFTEYTQTRHKDLVSITELAKRNYKEMSHDVTSKRFLLRK 390
                                    10        20        30        40        50        60        70        80        90      |103       113       123       133       143      |157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387   
                                                                                                                           97|                                              150|                                                                                                                                                                                                                                           
                                                                                                                           101                                               155                                                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:375
                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhh..eeeee...................eeeeehhhhhhhhhhhhhhhhhhh...ee..eeeee.....eeeee..eeeeehhhhhhhhhhhhhhh..eee...eeeeee.....eeeeeee.....eeeeeee.eeee.....hhhhhhhhh....eeeeee...eeeeeee...................eeeeee....eeeeee.....eeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.....eeeeee..ee....eee.hhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j33 B   2 SESVAIIGAGLVGCLAALAFSKEGYNVTLYDFRQDPRLDTTKNKNLKSINLAISARGIDALKSIDPDACEHILQDMIPMKGRMIHDLKGRQESQLYAINSINRSVLNNSLLDELEKSTTELKFGHKLVKIEWTDDKQICHFAIGEDLKTPHTEKYDFVIGCDGAYSATRSQMQRKVEMDFSQEYMNLRYIELYIPPTEEFKPNYGGNFAIAPDHLHIWPRHKFMLIALANSDGSFTSTFFGSKDQISDLITSKSRVREFLIENFPDIINIMDLDDAVKRFITYPKESLVCVNCKPYDVPGGKAILLGDAAHAMVPFYGQGMNCGFEDVRILMALLKKHSGDRSRAFTEYTQTRHKDLVSITELAKRNYKEMSHDV 381
                                    11        21        31        41        51        61        71        81        91     ||106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376     
                                                                                                                          97|                                                                                                                                                                                                                                                                                      
                                                                                                                          103
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J33)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J33)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J33)

(-) Gene Ontology  (19, 19)

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  4j33
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  KMO_YEAST | P38169
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  1.14.13.9
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KMO_YEAST | P38169: 4j2w 4j31 4j34 4j36

(-) Related Entries Specified in the PDB File

4j2w 4j31 4j34 4j36