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(-) Description

Title :  CRYSTAL STRUCTURE OF KYNURENINE 3-MONOOXYGENASE - TRUNCATED AT POSITION 394 PLUS HIS TAG CLEAVED.
 
Authors :  M. Amaral, C. Levy, D. J. Heyes, P. Lafite, T. F. Outeiro, F. Giorgini, D. N. S. Scrutton
Date :  05 Feb 13  (Deposition) - 10 Apr 13  (Release) - 01 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.03
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Monooxygenase Kynurenine His Cleaved, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Amaral, C. Levy, D. J. Heyes, P. Lafite, T. F. Outeiro, F. Giorgini, D. Leys, N. S. Scrutton
Structural Basis Of Kynurenine 3-Monooxygenase Inhibition.
Nature V. 496 382 2013
PubMed-ID: 23575632  |  Reference-DOI: 10.1038/NATURE12039

(-) Compounds

Molecule 1 - KYNURENINE 3-MONOOXYGENASE
    Chains: A, B
    EC Number: 1.14.13.9
    Engineered: YES
    Fragment: UNP RESIDUES 1-394
    Gene: BNA4, YBL098W, YBL0828
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: BIOSYNTHESIS OF NICOTINIC ACID PROTEIN 4, KYNURENINE 3- HYDROXYLASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:9 , GLY A:11 , LEU A:12 , VAL A:13 , ASP A:32 , PHE A:33 , ARG A:34 , LEU A:52 , ALA A:53 , ARG A:109 , HIS A:131 , LYS A:132 , LEU A:133 , CYS A:167 , ASP A:168 , GLY A:169 , ALA A:173 , TYR A:195 , GLY A:313 , ASP A:314 , GLN A:325 , GLY A:326 , MET A:327 , ASN A:328 , HOH A:501 , HOH A:505 , HOH A:509 , HOH A:514 , HOH A:534 , HOH A:537 , HOH A:563 , HOH A:597 , HOH A:601 , HOH A:620 , HOH A:621 , HOH A:646 , HOH A:655BINDING SITE FOR RESIDUE FAD A 401
2AC2SOFTWAREGLY B:9 , LEU B:12 , VAL B:13 , ASP B:32 , PHE B:33 , ARG B:34 , LYS B:48 , LEU B:52 , ALA B:53 , ARG B:109 , HIS B:131 , LYS B:132 , LEU B:133 , CYS B:167 , ASP B:168 , GLY B:169 , ALA B:173 , TYR B:195 , GLY B:313 , ASP B:314 , GLN B:325 , GLY B:326 , MET B:327 , ASN B:328 , HOH B:501 , HOH B:522 , HOH B:541 , HOH B:547 , HOH B:555 , HOH B:564 , HOH B:581 , HOH B:587 , HOH B:609 , HOH B:617 , HOH B:633 , HOH B:689BINDING SITE FOR RESIDUE FAD B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J34)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:300 -Pro A:301
2Lys B:300 -Pro B:301

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J34)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J34)

(-) Exons   (0, 0)

(no "Exon" information available for 4J34)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:378
                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhhh.eeeeee..................eeeeehhhhhhhhh.hhhhhhhhh...ee..eeeee.....eeeee.......eeeeehhhhhhhhhhhhhh...eeee.eeeeeee.....eeeeeee.........eee.eeee.....hhhhhhhhh....eeeeee..eeeeeeee...................eeeeeee..eeeeeee.....eeeeeeeehhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.....eeeeee........eee.hhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4j34 A   2 SESVAIIGAGLVGCLAALAFSKEGYNVTLYDFRQDPRLDTTKNKNLKSINLAISARGIDALKSIDPDACEHILQDMIPMKGRMIHDLKGRQESQLYGLHGEAINSINRSVLNNSLLDELEKSTTELKFGHKLVKIEWTDDKQICHFAIGEDLKTPHTEKYDFVIGCDGAYSATRSQMQRKVEMDFSQEYMNLRYIELYIPPTEEFKPNYGGNFAIAPDHLHIWPRHKFMLIALANSDGSFTSTFFGSKDQISDLITSKSRVREFLIENFPDIINIMDLDDAVKRFITYPKESLVCVNCKPYDVPGGKAILLGDAAHAMVPFYGQGMNCGFEDVRILMALLKKHSGDRSRAFTEYTQTRHKDLVSITELAKRNYKEMSH 379
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371        


Chain B from PDB  Type:PROTEIN  Length:390
                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee..hhhhhhhhhhhhhh..eeeeee..................eeeeehhhhhhhhhhh...........ee..eeeee.....eeeee.......eeeeehhhhhhhhhhhhh....eeee.eeeeeee.....eeeeeee.........eee.eeee.....hhhhhhhh.....eeeeee..eeeeeeee...................eeeeee....eeeeee.....eeeeeeeehhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhh......eeeeee........eee.hhhh........hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4j34 B   0 MMSESVAIIGAGLVGCLAALAFSKEGYNVTLYDFRQDPRLDTTKNKNLKSINLAISARGIDALKSIDPDACEHILQDMIPMKGRMIHDLKGRQESQLYGLHGEAINSINRSVLNNSLLDELEKSTTELKFGHKLVKIEWTDDKQICHFAIGEDLKTPHTEKYDFVIGCDGAYSATRSQMQRKVEMDFSQEYMNLRYIELYIPPTEEFKPNYGGNFAIAPDHLHIWPRHKFMLIALANSDGSFTSTFFGSKDQISDLITSKSRVREFLIENFPDIINIMDLDDAVKRFITYPKESLVCVNCKPYDVPGGKAILLGDAAHAMVPFYGQGMNCGFEDVRILMALLKKHSGDRSRAFTEYTQTRHKDLVSITELAKRNYKEMSHDVTSKRFLLR 390
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379|      390
                                                                                                                                                                                                                                                                                                                                                                                                                     379|         
                                                                                                                                                                                                                                                                                                                                                                                                                      381
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J34)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J34)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J34)

(-) Gene Ontology  (19, 19)

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  4j34
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KMO_YEAST | P38169: 4j2w 4j31 4j33 4j36

(-) Related Entries Specified in the PDB File

4j2w 4j31 4j33 4j36