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(-) Description

Title :  HUMAN HISTIDINE TRIAD NUCLEOTIDE BINDING PROTEIN 2 WITH BOUND AMP
 
Authors :  K. M. Maize, C. R. Wagner, B. C. Finzel
Date :  04 Jan 13  (Deposition) - 22 May 13  (Release) - 17 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hint, Histidine Triad, Hit, Phosphoramidase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. M. Maize, C. R. Wagner, B. C. Finzel
Structural Characterization Of Human Histidine Triad Nucleotide-Binding Protein 2, A Member Of The Histidine Triad Superfamily.
Febs J. V. 280 3389 2013
PubMed-ID: 23659632  |  Reference-DOI: 10.1111/FEBS.12330

(-) Compounds

Molecule 1 - HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN 2, MITOCHONDRIAL
    Chains: A, B
    EC Number: 3.-.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG9
    Expression System Strain: ROSETTA 2 PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: HINT2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HINT-2, HINT-3, HIT-17KDA, PKCI-1-RELATED HIT PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2AMP2Ligand/IonADENOSINE MONOPHOSPHATE
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
4PG51Ligand/Ion1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:63 , ARG A:79 , ASP A:80 , VAL A:81 , ASN A:136 , ALA A:142 , GLN A:143 , SER A:144 , VAL A:145 , HIS A:151 , 1PE A:202 , HOH A:301 , HOH A:304 , HOH A:305 , HOH A:308 , HOH A:310 , HOH A:320 , HOH A:339 , HOH A:352 , ARG B:58 , ASP B:61 , SER B:63BINDING SITE FOR RESIDUE AMP A 201
2AC2SOFTWARELYS A:139 , ALA A:142 , GLN A:143 , SER A:144 , AMP A:201 , HOH A:369 , GLN B:109 , TRP B:160BINDING SITE FOR RESIDUE 1PE A 202
3AC3SOFTWARETYR A:70 , GLN A:120 , THR A:121 , ALA A:124 , HOH A:366 , HOH A:371BINDING SITE FOR RESIDUE PEG A 203
4AC4SOFTWAREPHE B:56 , ARG B:79 , ASP B:80 , VAL B:81 , ALA B:82 , ASN B:136 , ALA B:142 , SER B:144 , VAL B:145 , HIS B:149 , HIS B:151 , HOH B:304 , HOH B:307 , HOH B:309 , HOH B:336 , HOH B:345 , HOH B:385BINDING SITE FOR RESIDUE AMP B 201
5AC5SOFTWAREARG A:156 , GLN A:159 , GLN B:73 , GLN B:74 , PRO B:161 , GLY B:163BINDING SITE FOR RESIDUE PG5 B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4INI)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Trp A:160 -Pro A:161
2Trp B:160 -Pro B:161

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4INI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4INI)

(-) Exons   (0, 0)

(no "Exon" information available for 4INI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:102
                                                                                                                                      
               SCOP domains d4inia_ A: automated matches                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeee...eeeee.......eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee............eeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 4ini A  62 KSLPADILYEDQQCLVFRDVAPQAPVHFLVIPKKPIPRISQAEEEDQQLLGHLLLVAKQTAKAEGLGDGYRLVINDGKLGAQSVYHLHIHVLGGRQLQWPPG 163
                                    71        81        91       101       111       121       131       141       151       161  


Chain B from PDB  Type:PROTEIN  Length:112
                                                                                                                                                
               SCOP domains d4inib_ B: automated matches                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhh......eeee...eeeee.......eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee............eeeee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 4ini B  52 APTIFSRILDKSLPADILYEDQQCLVFRDVAPQAPVHFLVIPKKPIPRISQAEEEDQQLLGHLLLVAKQTAKAEGLGDGYRLVINDGKLGAQSVYHLHIHVLGGRQLQWPPG 163
                                    61        71        81        91       101       111       121       131       141       151       161
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4INI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4INI)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HINT2_HUMAN | Q9BX68: 4inc 4njx 4njy 4njz 4nk0 5km5 5km8 5km9

(-) Related Entries Specified in the PDB File

4inc