4I91 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF CYTOCHROME P450 2B6 (Y226H/K262R) IN COMPLEX WITH ALPHA-PINENE.

Authors :   M. B. Shah, C. D. Stout, J. R. Halpert

Date :   04 Dec 12 (Deposition) - 03 Jul 13 (Release) - 31 Dec 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A

Keywords :   Oxidoreductase, Membrane Protein, Cyp2B6, P450, Cytochrome P450 2B6, Monooxygenase, Endoplasmic Reticulum, Heme, Iron, Membrane, Metal Binding, Microsome (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. R. Wilderman, M. B. Shah, H. H. Jang, C. D. Stout, J. R. Halpert
Structural And Thermodynamic Basis Of (+)-Alpha-Pinene Binding To Human Cytochrome P450 2B6.
J. Am. Chem. Soc. V. 135 10433 2013
PubMed-ID: 23786449 | Reference-DOI: 10.1021/JA403042K

Molecule 1 - CYTOCHROME P450 2B6
	Chains	:	A
	EC Number	:	1.14.13.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PKK
	Expression System Strain	:	JM109
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	CYTOCHROME P450 2B6
	Gene	:	CYP2B6
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	1,4-CINEOLE 2-EXO-MONOOXYGENASE, CYPIIB6, CYTOCHROME P450 IIB1

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 6)

No.	Name	Count	Type	Full Name
1	CM5	3	Ligand/Ion	5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE
2	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	SUC	1	Ligand/Ion	SUCROSE
4	TMH	1	Ligand/Ion	(+)-ALPHA-PINENE

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:98 , VAL A:113 , ILE A:114 , TRP A:121 , ARG A:125 , MET A:132 , ILE A:179 , ALA A:298 , GLY A:299 , THR A:302 , THR A:306 , GLN A:357 , LEU A:362 , LEU A:363 , VAL A:367 , HIS A:369 , LEU A:392 , PRO A:428 , PHE A:429 , SER A:430 , ARG A:434 , CYS A:436 , LEU A:437 , GLY A:438 , HOH A:717	BINDING SITE FOR RESIDUE HEM A 501
2	AC2	SOFTWARE	ARG A:85 , THR A:423 , GLU A:424 , PHE A:426 , ILE A:435 , GLU A:439 , HOH A:737	BINDING SITE FOR RESIDUE SUC A 502
3	AC3	SOFTWARE	PHE A:188 , GLU A:194 , MET A:198 , TYR A:244 , PHE A:296 , LYS A:384 , HOH A:910	BINDING SITE FOR RESIDUE CM5 A 504
4	AC4	SOFTWARE	LEU A:43 , MET A:46 , ASP A:47 , ARG A:48	BINDING SITE FOR RESIDUE CM5 A 505
5	AC5	SOFTWARE	PHE A:297 , ALA A:298	BINDING SITE FOR RESIDUE TMH A 506

(no "SS Bond" information available for 4I91)

(no "Cis Peptide Bond" information available for 4I91)

(no "SAP(SNP)/Variant" information available for 4I91)

(no "PROSITE Motif" information available for 4I91)

(no "Exon" information available for 4I91)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:465
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4i91a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhh...hhhhhhhhhhhhhh.eeeeee..eeeeeehhhhhhhhhhh.hhhhhhee.....hhhhhh.......hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.......ee....eee..eee....eeeehhhhhhh...........hhhhhh................hhhhh..hhhhhhhhhhhhhhhhhhheeee...hhhhh.....ee...ee......eeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i91 A  28 GKLPPGPRPLPLLGNLLQMDRRGLLKSFLRFREKYGDVFTVHLGPRPVVMLCGVEAIREALVDKAEAFSGRGKIAMVDPFFRGYGVIFANGNRWKVLRRFSVTTMRDFGMGKRSVEERIQEEAQCLIEELRKSKGALMDPTFLFQSITANIICSIVFGKRFHYQDQEFLKMLNLFYQTFSLISSVFGQLFELFSGFLKHFPGAHRQVYKNLQEINAYIGHSVEKHRETLDPSAPRDLIDTYLLHMEKEKSNAHSEFSHQNLNLNTLSLFFAGTETTSTTLRYGFLLMLKYPHVAERVYREIEQVIGPHRPPELHDRAKMPYTEAVIYEIQRFSDLLPMGVPHIVTQHTSFRGYIIPKDTEVFLILSTALHDPHYFEKPDAFNPDHFLDANGALKKTEAFIPFSLGKRICLGEGIARAELFLFFTTILQNFSMASPVAPEDIDLTPQECGVGKIPPTYQIRFLPRH 492
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

)

Protein Domains( (-)

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Organisms( (-)

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Class: All alpha proteins (14657)

Fold: Cytochrome P450 (480)

Superfamily: Cytochrome P450 (480)

Family: Cytochrome P450 (323)

Protein domain: automated matches (44)

Human (Homo sapiens) [TaxId: 9606] (17)

d4i91a_

(no "CATH Domain" information available for 4I91)

(no "Pfam Domain" information available for 4I91)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4i91)

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	4i91
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		Orientation in Membranes	:	OPM
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	CP2B6_HUMAN \| P20813
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	1.14.13.-
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UniProtKB/Swiss-Prot
	CP2B6_HUMAN \| P20813	:	3ibd 3qoa 3qu8 3ua5 4rql 4rrt 4zv8 5uap 5uda 5uec 5ufg

3ibd	CRYSTAL STRUCTURE OF P450 2B6 (Y226H/K262R) IN COMPLEX WITH 4-(4-CHLOROPHENYL)IMIDAZOLE
3qoa	CRYSTAL STRUCTURE OF P450 2B6 (Y226H/K262R) IN COMPLEX WITH 4-BENZYLPYRIDINE
3qu8	CRYSTAL STRUCTURE OF P450 2B6 (Y226H/K262R) IN COMPLEX WITH 4-(4-NITROBENZYL)PYRIDINE
3ua5	CRYSTAL STRUCTURE OF P450 2B6 (Y226H/K262R) IN COMPLEX WITH TWO MOLECULES OF AMLODIPINE

Description

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Ligands, Modified Residues, Ions (4, 6)

Sites (5, 5)

SS Bonds (0, 0)

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Exons (0, 0)

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SCOP Domains (1, 1)

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Pfam Domains (0, 0)

Gene Ontology (22, 22)

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