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(-) Description

Title :  CRYSTAL STRUCTURE OF THE RRM DOMAIN OF RNA HELICASE HERA FROM T. THERMOPHILUS IN COMPLEX WITH GGGC RNA
 
Authors :  M. G. Rudolph, D. Klostermeier
Date :  29 Nov 12  (Deposition) - 24 Apr 13  (Release) - 26 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.33
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Unwinding, Atpase, Heat Resistant, Rna Recognition Motif, Rna Binding, Dead Box Protein, Hydrolase-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Steimer, J. P. Wurm, M. H. Linden, M. G. Rudolph, J. Wohnert, D. Klostermeier
Recognition Of Two Distinct Elements In The Rna Substrate B The Rna-Binding Domain Of The T. Thermophilus Dead Box Helicase Hera.
Nucleic Acids Res. V. 41 6259 2013
PubMed-ID: 23625962  |  Reference-DOI: 10.1093/NAR/GKT323

(-) Compounds

Molecule 1 - HEAT RESISTANT RNA DEPENDENT ATPASE
    Chains: A
    EC Number: 3.6.4.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RRM DOMAIN (UNP RESIDUES 431-517)
    Gene: TT_C1895
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 274
    Synonym: HERA RNA HELICASE
 
Molecule 2 - 5'-R(P*GP*GP*GP*(RPC))-3'
    Chains: B
    Engineered: YES
    Other Details: 23S RIBOSOMAL RNA FRAGMENT
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1RPC1Mod. NucleotideCYTIDINE 3',5'-BIS(DIHYDROGEN PHOSPHATE)

(-) Sites  (0, 0)

(no "Site" information available for 4I67)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I67)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4I67)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I67)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I67)

(-) Exons   (0, 0)

(no "Exon" information available for 4I67)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:76
                                                                                                            
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeee....hhhhhhhhhhhh...eeeeeee..eeeeee...........eeee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4i67 A 424 AERSLLTGEEGWRTYKATGPRLSLPRLVALLKGQGLEVGKVAEAEGGFYVDLRPEARPEVAGLRLEPARRVEGLLE 499
                                   433       443       453       463       473       483       493      


Chain B from PDB  Type:RNA  Length:4
                                    
                 4i67 B   1 GGGc   4
                               |
                               4-RPC
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4I67)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I67)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I67)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q72GF3_THET2 | Q72GF3: 3eaq 3ear 3eas 3i31 3i32 3mwj 3mwk 3mwl 3nbf 3nej 4i68 4i69 4kbf 4kbg 5mao

(-) Related Entries Specified in the PDB File

3i31 4i68 4i69